Edem024621.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000448.1:217852-247825[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.018 1.7 10.7 3.5 1 23 267 289 267 290 0.93 2 13 0.63 62 5.8 1.5 1 23 297 319 297 319 0.97 3 13 0.55 53 6.0 3.7 1 23 323 345 323 345 0.93 4 13 0.0012 0.12 14.3 1.2 1 23 350 373 350 373 0.97 5 13 1.6 1.6e+02 4.5 0.1 2 23 379 401 378 401 0.77 6 13 0.25 24 7.1 0.0 2 20 411 429 410 431 0.93 7 13 0.002 0.2 13.7 0.0 3 23 442 463 441 463 0.95 8 13 0.09 8.7 8.5 0.1 2 23 469 491 468 491 0.94 9 13 0.00023 0.022 16.7 2.2 1 23 514 536 514 536 0.98 10 13 1.7e-05 0.0016 20.2 2.6 1 23 542 564 542 564 0.96 11 13 0.0015 0.14 14.1 1.5 3 23 572 592 570 592 0.96 12 13 1.8e-06 0.00017 23.3 1.3 1 23 598 620 598 620 0.97 13 13 2.7e-05 0.0026 19.5 1.4 1 23 626 649 626 649 0.96
Sequence Information
- Coding Sequence
- ATGTTAAACTGCCTGAAATTGGAGGACTCAGACGACATCTTCGCGTGTAGAATATGTCTTGCTACTGATATACAGTTGTACGGGATTATAGAACACCGCTTGGATGAAGCTTTTATGGATGTTACTGGTTCCGCGTTGTCGGCATGGGACGGCTACCCGCAGCACGTGTGCGCCGCGTGCCGCGTGCTgctgcggcgcgcggccggcctgcgcgcgcgcgcccgccgcgcgcacgCCATGCTGCAGCGCGTGCTCATGCTGCACCACACGATCACGACGAACCTGATCAAAACAGTGGACCGGGGAGCGTCAGGACTGATTCTACCACTGGTCGTCTCGGTGTGCCCAGAGCCCGTTTACTTTCAACATGAAGAAGTCGAGGACCTGATTAAGGTGGAGGTACCTTTGCTGCCTCCCTCCCCTGCCTTCCAAGTCCCCTCTCCTGTCGCCTCCCCAGTCCCCTCTCCAGTCCTCTCTCGAGTCCCCTCTCCTGTCCCCTCTTCAGTCTCCTGCAAGGACGAGCACAGCGTCAAGTGCGAAGACGACTCCAACGATGACGTGGCTCTGAGCGAGCTGCAGGTGTTTAAACCGAGGGAGAAGAAGAAACTTGTAAGGAAACATAAGACGAAGAAAGCGAAGACGGAGAAGAGGGAACGGAGAAAAACGGAGAAGATACGCGACGAAGACTTCCCGGAGTTCGAGAGAGAGTACAACTTCGATGTCGTCATTCTCTCTCGAGACCAGCAGATCGAAGACCTGGCGGCCCGGAAGACCAAAGACAACTACATGAACTCTGCGTTCAAATGCGAGAAGTGTTTCAAAGGCTTCTACACGGAGGCCACGCTCTCCAACCACAACGTGAAACATCACCATGAGAGCGTAGGCCCTCACGAGTGCGAGCTTTGCCTATGCCGGTTCCGTATTCCAGCCATCTTGCGGAGGCACCTGGCCACGCACCGGCTCAGGTTCCTGTGCCAGCACTGTGGATTCACGGCTAGAGACAGATCTCACGCGATGACCCACTCGAAAGAGCACAAGGGTTTGCGGTACGAGTGCCAATACTGCGGAGACAGTTTCAAaaaacgGTCAACGTACGGCACCCACGTGCGCATCCAACATCCGAATGAAAACAAATCGTGCGACGTCTGCGGTGAGACGTTTCTGGGTGCTCTCGGGCTAGCGTTACACAAGAAGAAGTCACATCGACAGGCAGTGGAGACCGGCTCCTCGCAGTGCGGGCAGTGCGGCGTTCGGTTCGAGAGCGAATATGCGCGCGAGCGGCACGTCGCGCTCGCTGCCAAGGGCTGCCAGCACACCAGGGCCTGCGCGCTGTGCGGCGAGAACTTCAAGGACGAGGCGGCCCTGCAGGCGCACGCGAGAGAGAGACACCAACAACGCGAGACGCAATGTTTAGAGTGCGACATGACGTTTGCAAGCGAGGCGTCCCGCAGTGTGCACTACGAGCGGGTGCACCTCAAGGTGAAGGTGCGCCGCTGCCTGCCCAAATCGGGGCGCAAGTACGACCGCTACGGGGACCACTTCATGTGCGAGATGTGCGGGAAGAAGTGCCAGAATAACATCGCCCTAAAGTACCACATCCGCTCCCACACTGGTGAGAAGCCGCACGCCTGTCCGCACTGCCCGAAGCACTACTCCACGCCCGTCGCTCTACAGTACCACATCAGGTCCCACACGGGCGACAAGCCGCTGGCCTGCCCTCACTGTCCCCTGCGTTACGCGACACACAAAGGACTGCAGACGCATTTGCTGAAACACACGGGGGAGCGGCCGTTCAAATGTGAAATCTGCCCAAAAGCTTTTACACAAAAAACTATGCTGCAGAAACACAAGACAGTCCATACTGGAGAAAAGCCCTTCTCGTGCGACATCTGCGGGAAAACGTTCACCCAGTCCGGCTCTGTGCACACGCACGTCAAATACGTGCACAAGAAgatgcccgcgccgccgcgcagccGCGGCAAGAGGGCTCCCGACTGA
- Protein Sequence
- MLNCLKLEDSDDIFACRICLATDIQLYGIIEHRLDEAFMDVTGSALSAWDGYPQHVCAACRVLLRRAAGLRARARRAHAMLQRVLMLHHTITTNLIKTVDRGASGLILPLVVSVCPEPVYFQHEEVEDLIKVEVPLLPPSPAFQVPSPVASPVPSPVLSRVPSPVPSSVSCKDEHSVKCEDDSNDDVALSELQVFKPREKKKLVRKHKTKKAKTEKRERRKTEKIRDEDFPEFEREYNFDVVILSRDQQIEDLAARKTKDNYMNSAFKCEKCFKGFYTEATLSNHNVKHHHESVGPHECELCLCRFRIPAILRRHLATHRLRFLCQHCGFTARDRSHAMTHSKEHKGLRYECQYCGDSFKKRSTYGTHVRIQHPNENKSCDVCGETFLGALGLALHKKKSHRQAVETGSSQCGQCGVRFESEYARERHVALAAKGCQHTRACALCGENFKDEAALQAHARERHQQRETQCLECDMTFASEASRSVHYERVHLKVKVRRCLPKSGRKYDRYGDHFMCEMCGKKCQNNIALKYHIRSHTGEKPHACPHCPKHYSTPVALQYHIRSHTGDKPLACPHCPLRYATHKGLQTHLLKHTGERPFKCEICPKAFTQKTMLQKHKTVHTGEKPFSCDICGKTFTQSGSVHTHVKYVHKKMPAPPRSRGKRAPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00660582; iTF_01072890; iTF_00654597; iTF_00290101;
- 90% Identity
- iTF_00660582;
- 80% Identity
- -