Efoe038084.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747121.1:9798413-9830709[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0037 0.29 12.9 3.5 1 23 257 279 257 280 0.95 2 13 0.65 52 5.8 1.6 1 23 287 309 287 309 0.97 3 13 0.54 43 6.0 3.7 1 23 313 335 313 335 0.93 4 13 0.0012 0.096 14.4 1.2 1 23 340 363 340 363 0.97 5 13 1.6 1.3e+02 4.6 0.1 2 23 369 391 368 391 0.77 6 13 0.87 69 5.4 0.0 3 20 402 419 400 421 0.91 7 13 0.00058 0.046 15.4 0.1 3 23 432 453 431 453 0.95 8 13 0.089 7.1 8.5 0.1 2 23 459 481 458 481 0.94 9 13 0.00022 0.018 16.7 2.2 1 23 504 526 504 526 0.98 10 13 1.6e-05 0.0013 20.3 2.6 1 23 532 554 532 554 0.96 11 13 0.0011 0.089 14.5 2.3 2 23 561 582 560 582 0.97 12 13 4.3e-06 0.00035 22.1 2.1 1 23 588 610 588 610 0.97 13 13 2.7e-05 0.0021 19.6 1.4 1 23 616 639 616 639 0.96
Sequence Information
- Coding Sequence
- ATGCTGAATAGTCTTAAGCTGGAAGATTCAGATGAACTTTTAGCGTGTAGAATATGTCTTGCTACAGACACCAATTTGTACGGGATTTTGGAGCACAGTCTAGGTGAAGCTTTCATCGATATCACTGGGACTACGTTGTCGGCTTGGGACGGGTACCCGCAGCATGTGTGCGACACGTGCCGCGTACTGCTGCGGCGCGCGGCCGGCCTGCGCTCTCGCTCTCGCCGCGCGCAAAACGAACTCAGGCGGATACTTATGTTGCATCACACGATAACGACTGACCTTGTGAGGCCGGTAGACCGGGCAGCGGCGGGCCTGGCTCTCCCCCTGGCTGTCTCAGTGTGTCCAGAGCCTATTTACTTCCAGCATGAAGAAGCTGAAGAGCTTATTAAGGTGGAGGTGCCTCTGCTCTCCCCCTCTCCAGCCCCCTCCCCAGCGCCCTCTCCAGTGCCCTCTCCCCCTTCTGCCCCATCCCCCTGCAAGGAGGAGCACAGCGTGAAGTATGAAGACGACTCTAACGATGACGTAGCTTTGAGCTTACTACAGGAGTACAGACCGAAGGAGAAGAAAAAGCGAGTTGTTAGGAAAGCGAAGACGAAAAAAGCGAAGACCGAGAAGAGAGAGCGGAGAAAAACTGAGAAGATAAGAGACGAAGACTTCCCCGCGTTTGAGAGGGAGTACAACTTCGATGTAGTCATACTGTCGAGAGAGCAGCAGATCGAAGAAATGGAGGCGCGTAAAGGGAAGGACAATTACTTGAACTCGCAATTCAAATGCGACAAATGCTTCAAAGGTTTCTACACAGAGGCGACGCTGACCAACCACAACGCGAAACACCACGACCACAGCGTCGGTCCCCACGAGTGCGACCTTTGCCTGTGCCGGTTCCGTATTCCAGCCATCCTTCGGAGGCATCTCGCGACACATCGGCTCAGGTTCCTGTGTCAACACTGTGGATTCACGGCTAGAGACAGGTCGCACGCGATGACTCATTCGAAAGAGCACAAAGGACTGCGTTACGAGTGCCAGTACTGCGGGGACTCTTTCAAGAAACGTTCCACATATGGAACGCACGTGCGTATTCAGCACCCGAACGAGAATAAGTCGTGCGACGTTTGCGGGGAGACGTTTCTGGGCGCTCTCGGGCTAGCGCTGCACAAGAAGAAGTCACATCGACAGGCGGCTGAGAGCGGGGCGGTTCATTGCGCGCAGTGTGGCGTTCGGTTCGAGAGCGAATATGCGCGCGAGCGGCACGTGGCGCTCGCGGCTAAAGGATGCCAGCATACCAGGGCGTGCTCACTTTGTGGCGAGAACTTCAAGGACGAAGAGGCGCTGCAGGCTCACGCGAGAGAGAGACACCAACATCGCCAGACGCAGTGCCTGGAGtgtGACATGACGTTCGCGAGCGAGGCGTCCCGTAGTGTCCACTATGAGCGCGTTCACCTCAAGGTGAAGGTGCGCCGCTGCCTGCCCAAGACGGGGCGCAAGTACGACCGCTACGGGGACCATTTCATGTGCGAGATGTGCGGGAAGAAGTGCCAGAATAACATCGCCCTGAAGTATCACATCCGCTCTCATACGGGAGAGAAGCCTCACGCCTGCCCACACTGCCCGAAGCACTACTCCACGCCCGTCGCTCTACAGTACCACATCAGGTCGCACACAGGCGACAAACCGCTGACCTGCCCCCACTGTCCCCTGCGTTACGCGACACACAAAGGACTGCAGACTCATTTGCTGAAGCACACCGGGGAGCGGCCGTTCAAATGCGAGATATGCCAGAAAGCGTTCACTCAAAAGACTATGCTGCAGAAACACAAGACTGTGCATACAGGAGAGAAACCATTCTCCTGCGATATCTGCGGAAAGACGTTCACTCAGTCCGGCTCTGTGCACACTCATGTCAAATACGTGCACAAGAAGatgcccgcgccgccgcgcaaCCGTGGCAAACGCGACCGCCCCGACTGA
- Protein Sequence
- MLNSLKLEDSDELLACRICLATDTNLYGILEHSLGEAFIDITGTTLSAWDGYPQHVCDTCRVLLRRAAGLRSRSRRAQNELRRILMLHHTITTDLVRPVDRAAAGLALPLAVSVCPEPIYFQHEEAEELIKVEVPLLSPSPAPSPAPSPVPSPPSAPSPCKEEHSVKYEDDSNDDVALSLLQEYRPKEKKKRVVRKAKTKKAKTEKRERRKTEKIRDEDFPAFEREYNFDVVILSREQQIEEMEARKGKDNYLNSQFKCDKCFKGFYTEATLTNHNAKHHDHSVGPHECDLCLCRFRIPAILRRHLATHRLRFLCQHCGFTARDRSHAMTHSKEHKGLRYECQYCGDSFKKRSTYGTHVRIQHPNENKSCDVCGETFLGALGLALHKKKSHRQAAESGAVHCAQCGVRFESEYARERHVALAAKGCQHTRACSLCGENFKDEEALQAHARERHQHRQTQCLECDMTFASEASRSVHYERVHLKVKVRRCLPKTGRKYDRYGDHFMCEMCGKKCQNNIALKYHIRSHTGEKPHACPHCPKHYSTPVALQYHIRSHTGDKPLTCPHCPLRYATHKGLQTHLLKHTGERPFKCEICQKAFTQKTMLQKHKTVHTGEKPFSCDICGKTFTQSGSVHTHVKYVHKKMPAPPRNRGKRDRPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00658744;
- 90% Identity
- -
- 80% Identity
- -