Edem036073.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epinotia demarniana
Gene Symbol
-
Assembly
GCA_945869435.1
Location
CAMBUM010000769.1:287829-290776[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.2e-05 0.0012 20.6 0.5 1 23 148 170 148 170 0.99
2 15 0.023 2.2 10.4 3.6 1 23 185 208 185 208 0.96
3 15 0.00048 0.047 15.6 3.2 1 23 213 235 213 235 0.99
4 15 1.4e-06 0.00014 23.6 1.2 1 23 241 263 241 263 0.99
5 15 8.1e-06 0.00079 21.2 0.9 1 23 269 291 269 291 0.99
6 15 8.4e-06 0.00082 21.2 2.4 1 23 297 319 297 319 0.99
7 15 2e-05 0.0019 20.0 2.5 1 23 325 347 325 347 0.99
8 15 0.0063 0.61 12.1 1.1 1 23 353 375 353 375 0.99
9 15 1.8e-05 0.0018 20.1 4.0 1 23 381 403 381 403 0.99
10 15 2.9e-05 0.0028 19.5 2.1 1 23 409 431 409 431 0.99
11 15 5.9e-06 0.00057 21.6 2.9 1 23 437 459 437 459 0.99
12 15 5e-05 0.0049 18.7 0.9 1 23 465 487 465 487 0.99
13 15 5.7e-05 0.0056 18.5 1.1 1 23 493 515 493 515 0.99
14 15 0.0002 0.019 16.8 0.8 1 23 521 544 521 544 0.97
15 15 0.047 4.5 9.4 0.2 3 23 552 572 550 572 0.97

Sequence Information

Coding Sequence
ATGTCACTGGAGACATTGTGTGTGAAGACTGAGGCCGAGGAGGTGTGTGTGAAAGAGGAGGCTGACAAGTGTGAAGATGAGGCCGGGGCACGTGTAAAGGAGGAGGTGGAGAGTGCAGCCTTGCGCGAGCTGTATGCGGGCCACCAGTTCAAGGACGAGCTCGTGCTGGGCCCCGAGGAAATGCACCGGCCTTGTGTGCTCCCAGTACTTCCAGGTCAAGCTCGACtagcttataaaaataaaccgcCGAAAACAAACAAACGCCAAGCGCGAGTTCAAAGGAAGAAAGATAATACTGAAAAACATAGTTCCGTCGAAAAACTTCAAGAGCCATCTACTTCTCACGCGGAGTCACCAATGAATACGGACATACAAGAGGTCCCTCCTGAACAACCTGCCGTCAATACATTCTCTGGCAAAACGGACTCGAATGCGACTAAATTTAAATGCAACCAGTGTGGCAAGGGTTTCGATATAAAGTTGGAGTTAGAGAAACACATACAAACACACGAGCTGATGATAAAGAGTAAGACTTTAAAAGCGAGTAAGGATTTCACGTGCAAGAAATGCAGTTGTACATTTGAGACGAAACTGCTTCTAGTGGAGCATGCGAAGAGCCGGCATGCCAAGGTATATTTCACTTGCCCAGAATGTGAGTATATGACTTGTCTCAAAAGAAGTTTACAGACACATTTAAGGACTCACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCCAGAGCAGTAATTTACAAAACCATCTGAGAACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCCGGAGCGGTAGTTTACAAAACCATCTGAGGACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCCAGAGCAGTCATTTACAAGAACATCTGAGAACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCCATAGCGGTAGTTTACAAAAACATCTGAGGACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCCAGAGAGGTAGTTCACAAAACCATCTGAGGACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCACGTTTGCCCATAGCAGTAGTTTACAAACCCATCTGAGGACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCCATAGCGGTAGTTTACAAAACCATCTGAGAACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGTTCCGCGTTTGCCCAGAGCAGTCATTTACAAAACCATCTTAGAACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCGTGAGCTATAGTTTACAAAATCATCTGAGAACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCCAGAGCAGTCGTTTACAAGAACATCTGAGAACACACACTGGAGTTAAGCCATTTGAGTGCAACATATGCGAGTACAAGGCTACTCGGTCTAGTCTTCTAAAGAGCCATCTAATGAGCAGGCACTCGGGCCGAAAGCCGTACGGTTGCGGCACTTGCAGTTACAGGGGTGCCACTAGAGGACTTTTATCACAACATATGAAAATACACCAAAACCACGATTAG
Protein Sequence
MSLETLCVKTEAEEVCVKEEADKCEDEAGARVKEEVESAALRELYAGHQFKDELVLGPEEMHRPCVLPVLPGQARLAYKNKPPKTNKRQARVQRKKDNTEKHSSVEKLQEPSTSHAESPMNTDIQEVPPEQPAVNTFSGKTDSNATKFKCNQCGKGFDIKLELEKHIQTHELMIKSKTLKASKDFTCKKCSCTFETKLLLVEHAKSRHAKVYFTCPECEYMTCLKRSLQTHLRTHTGDKPYKCSQCSSAFAQSSNLQNHLRTHTGDKPYKCSQCSSAFARSGSLQNHLRTHTGDKPYKCSQCSSAFAQSSHLQEHLRTHTGDKPYKCSQCSSAFAHSGSLQKHLRTHTGDKPYKCSQCSSAFAQRGSSQNHLRTHTGDKPYKCSQCSSTFAHSSSLQTHLRTHTGDKPYKCSQCSSAFAHSGSLQNHLRTHTGDKPYKCSQCSSAFAQSSHLQNHLRTHTGDKPYKCSQCSSAFAVSYSLQNHLRTHTGDKPYKCSQCSSAFAQSSRLQEHLRTHTGVKPFECNICEYKATRSSLLKSHLMSRHSGRKPYGCGTCSYRGATRGLLSQHMKIHQNHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00658655;
90% Identity
-
80% Identity
-