Edem037316.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epinotia demarniana
Gene Symbol
Prdm9
Assembly
GCA_945869435.1
Location
CAMBUM010000814.1:135628-148720[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.6e-05 0.0015 20.3 0.5 1 23 284 306 284 306 0.99
2 15 0.029 2.8 10.0 3.6 1 23 321 344 321 344 0.96
3 15 0.0008 0.078 14.9 2.7 1 23 349 371 349 371 0.99
4 15 6.4e-06 0.00063 21.5 1.3 1 23 377 399 377 399 0.99
5 15 0.00016 0.015 17.2 1.3 1 23 405 427 405 427 0.99
6 15 8.3e-06 0.00081 21.2 2.2 1 23 433 455 433 455 0.99
7 15 0.00019 0.019 16.9 1.0 1 23 461 483 461 483 0.99
8 15 0.00019 0.019 16.9 1.0 1 23 489 511 489 511 0.99
9 15 8.3e-06 0.00081 21.2 2.2 1 23 517 539 517 539 0.99
10 15 8.3e-06 0.00081 21.2 2.2 1 23 545 567 545 567 0.99
11 15 8.3e-06 0.00081 21.2 2.2 1 23 573 595 573 595 0.99
12 15 7.5e-06 0.00073 21.3 2.9 1 23 601 623 601 623 0.99
13 15 1.3e-06 0.00012 23.7 1.1 1 23 629 651 629 651 0.99
14 15 0.00027 0.026 16.4 0.7 1 23 657 680 657 680 0.97
15 15 0.06 5.8 9.0 0.2 3 23 688 708 686 708 0.97

Sequence Information

Coding Sequence
ATGAGCCGCTTCAACTTGCGGAAGCGCGCCCGCGTGAGCTACTACGAGCCGGAGGAGCCCCCCTTCGACGAGTTTGTCTTCTGCTCCGAGTGCCGGGATTATGTGTACGAGTACTGCTCCATACATGGCCCCCTACTTGTGATACCGGACGACAAGGTGCCCGCCGTGACGGGGCTCCCCGCGTTcgtgccgcgcgccgcgctcTCCGTCCCGCGCGAGTTCCTGCACATCGCCTACTCCTACATCCCAGAGGCTGGCCTGGGAGTGTTCAGCACGCTGACGCTGCCGGTTGGCGTGCGCTTCGGGCCCTACCGCGGCCAGCGCACCAAGAGCGCCGGCGACTCCAACTACGGCTGGCAGATCTACGACCGCAATCACAAGCCGCTGCACATCGTGGACGCGAGCGACGCCAACAACTCCAACTGGATGCGCTACGTGAACTGCGCGCGCCACCACTCCGAGCAGAACCTGGTCGCCTTCCAGTACCAGGGCGAGCTGTACTACAGGACGGTGAAGGTCGTGCCTCGCTTCTCGGAGCTGCTGGTGTTCTACGGCAGCGAGTTCGCGGACTGGCTCGGCGTCGACCTGCGCGCCTACAACAAGCCGTGCGTCTGCCTCGCCTGTCAAGCTCGACtagcttgtaaaaataaactgCCGAAAACAAACAAACGCCAACTGCGAGTTCAAGGGAAGAAAGAAAATACTGAAAAACATAGTCCAGTCAAAAAACTTCAAGAGCCATCTACTTCTCACGCGGAGTCACCAATGAACACGGAAATACAAGAGGTTCCTCCTGAACAACCTGCCGTCAATACATTCTCTGGCAAAACGGACTCGAATGCAACTAAATTTAAATGCAACCAGTGTGGCAAGGGTTTCGATATAAAGTTGGAGTTAGAGAAACACATACAAACACACGAGCTGATGATAAAGAGTAAGACTTTAAAAGCGAGTAAGGATTTCACGTGCAAGAAATGCAGTTGTACATTTGAGACGAAACTGCTTCTAGTGGAGCATGCGAAGAGCCGGCATGCCGAGGTATATTTCACTTGCCCAGAATGTGAGTATATCACTTGTCTCAAAAGAAGTTTACAGACACATTTAAGGACTCACACTGGAGACAAGCCATATAAATGTAACCAGTGTAGCTCCGCGTTTGCCCGGAGCGGTACTTTACAAAAACATCTGAGGACACACACTGGATATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCGTGAGCTTTAGTTTACAAAACCATCAGAGGACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCCAGAGCAGTCATTTACAAATCCATCTGAGGACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCGTGAGCTTTAGTTTACAAAACCATCTGAGGACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCGTGAGCTTTAGTTTACAAAACCATCTGAGGACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCCAGAGCAGTCATTTACAAATCCATCTGAGGACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCCAGAGCAGTCATTTACAAATCCATCTGAGGACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCCAGAGCAGTCATTTACAAATCCATCTGAGGACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCTCCGCGTTTGCCCAGAGCAGTCATTTACAAAACCATCTGAGGACACACACTGGAGATAAGCCATATAAATGTAGCCAGTGTAGCGCTGCGTTTACCCAGAGCGGTAGTTTACAAAAACATCTGAGAACACACACTGGAGTTAAGCCATTTGAGTGCAACATATGCGAGTACAAGGCTACTCGGTCTAGTCTTCTAAGGAGCCATCTAATGAGCAGGCACTCGGGCCGAAAGCCGTACGGTTGCGGCACTTGCAGTTACAGGGGTGCCACTAGAGGACTTTTATCACAACATATGAAAATACACCAAAACCACGATTAG
Protein Sequence
MSRFNLRKRARVSYYEPEEPPFDEFVFCSECRDYVYEYCSIHGPLLVIPDDKVPAVTGLPAFVPRAALSVPREFLHIAYSYIPEAGLGVFSTLTLPVGVRFGPYRGQRTKSAGDSNYGWQIYDRNHKPLHIVDASDANNSNWMRYVNCARHHSEQNLVAFQYQGELYYRTVKVVPRFSELLVFYGSEFADWLGVDLRAYNKPCVCLACQARLACKNKLPKTNKRQLRVQGKKENTEKHSPVKKLQEPSTSHAESPMNTEIQEVPPEQPAVNTFSGKTDSNATKFKCNQCGKGFDIKLELEKHIQTHELMIKSKTLKASKDFTCKKCSCTFETKLLLVEHAKSRHAEVYFTCPECEYITCLKRSLQTHLRTHTGDKPYKCNQCSSAFARSGTLQKHLRTHTGYKPYKCSQCSSAFAVSFSLQNHQRTHTGDKPYKCSQCSSAFAQSSHLQIHLRTHTGDKPYKCSQCSSAFAVSFSLQNHLRTHTGDKPYKCSQCSSAFAVSFSLQNHLRTHTGDKPYKCSQCSSAFAQSSHLQIHLRTHTGDKPYKCSQCSSAFAQSSHLQIHLRTHTGDKPYKCSQCSSAFAQSSHLQIHLRTHTGDKPYKCSQCSSAFAQSSHLQNHLRTHTGDKPYKCSQCSAAFTQSGSLQKHLRTHTGVKPFECNICEYKATRSSLLRSHLMSRHSGRKPYGCGTCSYRGATRGLLSQHMKIHQNHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00658657;
90% Identity
-
80% Identity
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