Edem038625.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000871.1:130550-136994[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.7e-06 0.00036 22.3 0.1 2 23 126 147 125 147 0.96 2 13 0.00015 0.014 17.2 0.7 1 23 153 175 153 175 0.96 3 13 3e-05 0.0029 19.4 3.0 1 23 181 203 181 203 0.98 4 13 2.3e-05 0.0022 19.8 1.1 1 23 209 231 209 231 0.98 5 13 3.3e-06 0.00032 22.4 0.9 1 23 244 266 244 266 0.97 6 13 3.8e-06 0.00037 22.2 0.7 1 23 272 294 272 294 0.96 7 13 0.00011 0.011 17.6 2.4 1 23 300 322 300 322 0.97 8 13 2.2e-05 0.0022 19.8 0.8 1 23 328 350 328 350 0.96 9 13 2.5e-06 0.00024 22.8 0.7 1 23 356 378 356 378 0.98 10 13 6.1e-07 5.9e-05 24.7 1.6 1 23 384 406 384 406 0.98 11 13 1.8e-07 1.8e-05 26.4 0.6 1 23 412 434 412 434 0.98 12 13 6.7e-06 0.00065 21.5 2.4 1 23 440 462 440 462 0.98 13 13 8.3e-07 8e-05 24.3 0.7 1 23 468 491 468 491 0.96
Sequence Information
- Coding Sequence
- ATGGACGCTGGCTGCGCGGAGACCACGGTGAAGGCCGAGGCAGGCGTTGCGGAGCCAGTGCAGTGTCCAGAGGCTGAGGTGGCTCCCGTGAAGGTGGAGGTGGTTGTGAAACAGGAGCCCGTGGAAGCCGGCCCGAGCGCGCCCGGCCTGCAGTCCCATGAACCGGTGTTTACGGAACACATCTGCATTAAGGTAGAGGCGGAATTCGTGGGCGTCAAGGAGGAGCCCGATGGCGGGGGCGAGAGCGAGAGCGCGGACCCGAGTGAGAGCGAGACGTCGCATGCGGATGACGAGCCAGACGACGAGGACCCTCTCTCGGCGGGCGCCCCGCCCCCCGCCCCGCTGCGCTCCTCGCGCATCCACGGCAAGTCCGTCTCCTGTGAACTTTGTGCTAAAAATTTCACGCAAGCGAGCAATTTAAAAGCGCACATGCTGATTCACACGGGACAGAGACCGTACGCCTGCAATATATGCGATCAGCGGTTCAGGAAACTGAGCACTGTGAAGAAACACGAACTTATTCACACTGGGGAAAAGCCGTTCCAATGCCGTCAGTGCGACAAGCGGTTCAGGCTGTCGGACACTCTCAAGAAACACGAGCGGCTGCACACAGGAGAAAAACCATACTcctgtaaaatatgtaaaaaagagTACATTCAGCTGGTGAGTTTAAGGAGGCACGAACGTTCCCACCCAGAAGAGTACCCCGACGCCCTTCCGCTCTTCACCCACCCTTGCCTTATTTGTGAAAAGCAGTTCGAGTCACCGAGTGACCTGAAGAGACATGAACGGACGCACACGGGAGAAAAACCATACTTATGCAATATATGTAACAAGAGCTTTGCACAAATGGTGACATTGAGGCAACACCAACGAATTCACACTGGAGAGAAACCGCACTCCTGCAAAATGTGTTCAAAGACGTTCGCAGACTTAAGAACTCTGAAGGACCATGAACGGATACACACTGGAGAAAAACCTTTTGCCTGCAATGCGTGCGACAAATCGTTCTCTCGGTTGAATACTTTAAGGAAACATGAACAAATCCATACGGGGGAAAAACGGTTTTCGTGCAAAGTATGCCAAAAGCGTTTCAGGCAATCAGGTGCGTTAAACCTGCATGTACGGATCCATACAGGAGAAAAACCATTCACCTGTGAAACATGTCACAAAGAGTTTTCGCGACCTGACGCTCTGAAGAAACACGCGCGGATCCACTCAGGAGAGAAACGATACAGCTGTGGAGTGTGTAACAAAGAGTTCACAGATTCGAGCAACTTGAAGAAACATGGACGCATCCACACCGGTCTAAAACCATACGCATGTGAAACGTGCAAGCGGGAGTTCACTGACCTGAGCCATTTGAAGAAACACGAGCGGATACATACTGGGGAGAAACCATACACGTGTAAAATCTGTAATAAAGCGTTCGCAGTGTCGAGTACTTTGAAGAAACATCAACAATTAATTCACTCCGGCAAATCAAGCTAa
- Protein Sequence
- MDAGCAETTVKAEAGVAEPVQCPEAEVAPVKVEVVVKQEPVEAGPSAPGLQSHEPVFTEHICIKVEAEFVGVKEEPDGGGESESADPSESETSHADDEPDDEDPLSAGAPPPAPLRSSRIHGKSVSCELCAKNFTQASNLKAHMLIHTGQRPYACNICDQRFRKLSTVKKHELIHTGEKPFQCRQCDKRFRLSDTLKKHERLHTGEKPYSCKICKKEYIQLVSLRRHERSHPEEYPDALPLFTHPCLICEKQFESPSDLKRHERTHTGEKPYLCNICNKSFAQMVTLRQHQRIHTGEKPHSCKMCSKTFADLRTLKDHERIHTGEKPFACNACDKSFSRLNTLRKHEQIHTGEKRFSCKVCQKRFRQSGALNLHVRIHTGEKPFTCETCHKEFSRPDALKKHARIHSGEKRYSCGVCNKEFTDSSNLKKHGRIHTGLKPYACETCKREFTDLSHLKKHERIHTGEKPYTCKICNKAFAVSSTLKKHQQLIHSGKSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00656350;
- 90% Identity
- iTF_00656350;
- 80% Identity
- -