Basic Information

Insect: Epinotia demarniana
Gene Symbol: -
Assembly: GCA_945869435.1
Location: CAMBUM010001873.1:3950-12608[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00029 0.028 16.3 9.6 1 23 164 186 164 186 0.98

2 16 2.7e-05 0.0027 19.5 5.5 1 23 192 214 192 214 0.97

3 16 0.0064 0.62 12.1 3.4 1 23 220 242 220 242 0.97

4 16 1.3e-06 0.00013 23.7 0.8 1 23 248 270 248 270 0.98

5 16 1.2e-05 0.0011 20.7 3.7 1 23 308 330 308 330 0.98

6 16 6.5e-06 0.00063 21.5 3.6 1 23 334 356 334 356 0.98

7 16 0.00036 0.035 16.0 4.8 1 23 362 384 362 384 0.98

8 16 1.1e-06 0.00011 24.0 3.1 1 23 390 412 390 412 0.98

9 16 0.00014 0.013 17.3 2.2 1 23 418 441 418 441 0.95

10 16 5.6e-07 5.4e-05 24.9 1.1 2 23 457 478 456 478 0.97

11 16 6.3e-06 0.00061 21.5 2.3 1 23 484 506 484 506 0.98

12 16 2.3e-06 0.00022 23.0 4.1 1 23 512 534 512 534 0.98

13 16 4.1e-06 0.0004 22.1 1.2 1 23 540 562 540 562 0.98

14 16 6e-06 0.00058 21.6 4.8 1 23 568 590 568 590 0.98

15 16 0.00036 0.035 16.0 1.0 1 23 596 618 596 618 0.97

16 16 1.4e-05 0.0013 20.5 3.6 1 23 624 647 624 647 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00029	0.028	16.3	9.6	1	23	164	186	164	186	0.98
2	16	2.7e-05	0.0027	19.5	5.5	1	23	192	214	192	214	0.97
3	16	0.0064	0.62	12.1	3.4	1	23	220	242	220	242	0.97
4	16	1.3e-06	0.00013	23.7	0.8	1	23	248	270	248	270	0.98
5	16	1.2e-05	0.0011	20.7	3.7	1	23	308	330	308	330	0.98
6	16	6.5e-06	0.00063	21.5	3.6	1	23	334	356	334	356	0.98
7	16	0.00036	0.035	16.0	4.8	1	23	362	384	362	384	0.98
8	16	1.1e-06	0.00011	24.0	3.1	1	23	390	412	390	412	0.98
9	16	0.00014	0.013	17.3	2.2	1	23	418	441	418	441	0.95
10	16	5.6e-07	5.4e-05	24.9	1.1	2	23	457	478	456	478	0.97
11	16	6.3e-06	0.00061	21.5	2.3	1	23	484	506	484	506	0.98
12	16	2.3e-06	0.00022	23.0	4.1	1	23	512	534	512	534	0.98
13	16	4.1e-06	0.0004	22.1	1.2	1	23	540	562	540	562	0.98
14	16	6e-06	0.00058	21.6	4.8	1	23	568	590	568	590	0.98
15	16	0.00036	0.035	16.0	1.0	1	23	596	618	596	618	0.97
16	16	1.4e-05	0.0013	20.5	3.6	1	23	624	647	624	647	0.97

Sequence Information

Coding Sequence: ATGGACGCCCGGCATTCGTGCCGCTGTTGCCTGGTGCGCCCTCCGGACAAGGGCCTCGACACTCTATACAGCCATCTCGGCAAAACGGAGATATATTCAGACATGCTGAGAGAATGCTTCGATATACATGTAAATTCAGCGAATGGTGAGTGCGGTATCTGCGAGGTGTGCGTGGGCCGGCTGCGGGATGCGAGTGACTTCAAGCTTCAAGTGCAGCGCAGCCAGGCGGAGCTGCTGTCACGGATGCAGAGAGGTGGCAGTGCCAAAGATGAGAACACTCGGAAGCCTGTTGCCGTCAACCACAAACCTCCTAAATATGAGTTGGAAAAAGCTTACGTCGAAGACGCGGAAATGTGTGAAGTCAAGATGGAGAAAACAGAAAACCAGGTGGATACGAGTGATGAGGAGAATAAACCATTGGCGACATACAGCAGTCCGCTGGCATCGTcaccgcccgcccccgccccgccccgTGGCACTGGCATAATGCACACCTGCAAGATATGCCAAAAATCCTTCGACCACCATTCAGCGCTCAAAAACCATCATCGCATTCACACAGGAGAAAAACCATTTTCGTGCAATGTCTGCCACAAGAGATTCTCACAAAAAGGTAACTTGACCTCCCATTTCAAATATCACATGGGTGATTATAGATTCTTTTGTGAAGTATGCAATAAGAGATTTACACAGAAGTGTATCATGGTTAAACATATGATGATACACACTGGAGTTAGACCTTACGCCTGTGAAGTGTGCGATAAAAGATTTACACTAAAAACCAATTTGACTGTTCATTTAAAAACCCATTTAAAATATGAACATAATAGTGAACACGCAACAGAGAAGCCTTTAAGTGAGAAAAAGACGGAAGAGCCGGAGAAGACTAATTCAAAACATACAAAGTCAAAAGAGCCGTTTTTTGAATGTGAAGTGTGTAAAAAACGGTTTGCACAAAAATGCAATTTAAAAGCTCATTTAAAGTACCACACACCCCGATTCTCTTGCGACCAGTGCGAAAAGAAATTCACCTTTAAGTCTCACCTTAATGCTCATATTCTTCGTCACAAGGGCGAACCGATTTTCTCGTGCAGCGAATGCAGTAAACAGTATAAATCCAAACATTCTTTAAGTCTTCATTTAAAAACCCACACGGGTGATTATAAGTATACTTGCAGTGAGTGCAACAAACAATTCGTACATAAGGAGACTTTGAAACGACATATGCTCGTGCACACTGGAGAGAGAGCCTTTGCCTGTGATATATGCCATAAGACTTTCCCTCTAAAGGGCACCTTGAAGTCTCATCTAAAATACAGACACGGTCAAGGTGTAGAAAGTAACACGAGAGACACATCGTCATCATTAACCTGCGAAACGTGCAACAAGCAATTCAGCCAAAGGTCTGCTCTAAACAGGCACATGCAAATACACACTGGAGAAAAACATTATAGCTGTGAAATCTGTAAAAAGCAATTTTCTCAAAAGAACTATTTGTCCAAACATCTTGAGACGCATTCCGGGAAAAGGCCATTCATGTGCGAAATCTGCAGTAAAACATTCACACATAAAAGCACTTTGAAAGCTCATAGATCGACGCATTCTGAAGAAAAACCATATGCCTGTGAAATATGTCACAAGCGATTCCGACAAAGCAAAGGATTGCAAGGACACATGATGATCCACCAGGGAATCAAACAACACACCTGCGATGTATGCAGTAAGCAATTCAGACATAAGTCCGCCCTAATGGTCCACATGCGACGACACACAGGACAGCGGCCACATTCTTGTGATATCTGCAAAAGGCAATTTATAGTTTTAGCTGAACTAAGAGTGCATTATCGTAGTCACACTGGAGAGAAACCATATGCGTGTGAAATATGTCACACGAAATTCGCGAGACCTGATCATTTCAGGAGACATCTTAAACGTGTTCACAACGAGAAGCCTACGAAATATACTGTACTTTAA
Protein Sequence: MDARHSCRCCLVRPPDKGLDTLYSHLGKTEIYSDMLRECFDIHVNSANGECGICEVCVGRLRDASDFKLQVQRSQAELLSRMQRGGSAKDENTRKPVAVNHKPPKYELEKAYVEDAEMCEVKMEKTENQVDTSDEENKPLATYSSPLASSPPAPAPPRGTGIMHTCKICQKSFDHHSALKNHHRIHTGEKPFSCNVCHKRFSQKGNLTSHFKYHMGDYRFFCEVCNKRFTQKCIMVKHMMIHTGVRPYACEVCDKRFTLKTNLTVHLKTHLKYEHNSEHATEKPLSEKKTEEPEKTNSKHTKSKEPFFECEVCKKRFAQKCNLKAHLKYHTPRFSCDQCEKKFTFKSHLNAHILRHKGEPIFSCSECSKQYKSKHSLSLHLKTHTGDYKYTCSECNKQFVHKETLKRHMLVHTGERAFACDICHKTFPLKGTLKSHLKYRHGQGVESNTRDTSSSLTCETCNKQFSQRSALNRHMQIHTGEKHYSCEICKKQFSQKNYLSKHLETHSGKRPFMCEICSKTFTHKSTLKAHRSTHSEEKPYACEICHKRFRQSKGLQGHMMIHQGIKQHTCDVCSKQFRHKSALMVHMRRHTGQRPHSCDICKRQFIVLAELRVHYRSHTGEKPYACEICHTKFARPDHFRRHLKRVHNEKPTKYTVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00656357; iTF_00658643; iTF_00657469;
90% Identity: iTF_00657469;
80% Identity: iTF_00658643;