Edem033885.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000700.1:98419-100344[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-07 7.8e-05 23.8 0.0 16 42 28 54 16 57 0.87
Sequence Information
- Coding Sequence
- atggttaataaatataaaagaaaaacgtCTAATGCATCATGGGACGAGGAAGTCATGAAACTTGCTATGGAAGAAGCTAGTAAAACCTCAGTGAATAGTGCCGCTAAGAAGTACGGTATAAACTTATCCACGTTGCAAAGACACATTAAAAAAGGATGCCCGAAGAAGAAACTTGGGAGGTACACAACTATATTCACGGACAGTCAGGAACTTGAACTTCTCGAatatgtgtttcaaatggatgGTTTGTTTTTTGGACTTACCAAGAAAGAATTCTTAGAGCTCGTGTGCCAATATGCAGAAACCAACAACGTCCCACACCCATTCAAAAATGGAACGGCAGGTGAAGATTGGTACAGTGGGTTTAAAACAAGACATCCTGATTTAGCTCTACGTCGTCCAGAACAAAGATTCTTCGACTTGCTAGAGGGAGAGATCGATAAACATAAAATCGACGCCACGCGCATTTACAACGTCGACGAAACTGGAGTTCAGACGAATAGCAACAAGCCGCCTAGAATTCTCAGTAGATCAGGAAAAAAACAGGTTGGTGTGATATCTAGTGTAGAGCGTGGTAAACTCACAACAGTGGTTTGCTGTTGCAACGCAGCAGGTGCGTTTATACccccatttttaatttttgggcGAAAGCGAATGGTGCCTAGACTTCTAGATGGCGCTCCACCTGGATCAGTCGCAAGCTGCACAGACAACGGCTGGATAAACGGGCCAACATTCTTAGACTGGCTTCGACATTTTGTGGCTATGACTAGGCCAACTggtgacaaaaaaataattttaataatggaCAATCACGTGTCACATAAATATCTGGAAGTCCTGGAGTATGCTTCAAAGAACAATGTGATTTTTGTGTCTCTACCGCCACACACAACGCACCGTTTACAGCCCTTGGATACGTGTGTCTACggaccatttaaaaattatttcgaaCAAGCTGTTTCGCTGTTTCAGCGAACCCATGTCGGGCGCATTATTTCACAGTATGACGTGGCTAGGTTGTTTGGTGAAGCCTACATGAAAGCGGCTAGTGCCCATAACGCAATCAAAGGGTTTTCTTCCACTGGCATTTGGCCAACCAACCGGCATATATTTGACGACAGTGATTATATGCCATCTTCTTTGACAGACAGGCCAGAACCAGTAACTGGGAATGAGGAGTTAACAACTATTCAACCCAATGAATCGGATATTGAAATACCTAACGCCAATGCTGCAGAAACACCGTCTGTTTTAAACGAAGCACTAGACAGTACAGCAGCAGTGGCTATAGGACAAACTGAAGAAACGGCACCAGAGATGCAATCTGACACTTCTTCACCACAAGTGGCTGAGACAGAACTGAGGTTGCAAGTTACTGAAGTCAACAGACCTTTGACTCCAGAAATTACCAGAGTAAATGACCGTATACAGCCATCACCACCAATAAAACGGCATAAGACTCCATTAGACATCAGGCCACTCCCTCAAATGACACCGAATGTATCTATACGAAAACGTAAAGCCCAAAAGGCTGAAATTCTAACAAGTACACCAGTAAAAGAGGAACAAAGAGAAAGAGAAAATAAGAAGAAGATACCTACTAACACTAAGCTCAAGGCAGTGAAGAAAAATTTAATTGAACCCagcactaatgaaaataaatgtggCAAAAAGAAGAAACAATCGAAGGAAGTAAAAGCTTCTTGTAGTAACACTAACAAGAGAGAGGTAAGATCCAAACGTGGTCCAAAAAACAGTCAAAATGATGAAGCTGAATACTCTTGCTTAGTCTGTGCTGAGTTATATACTCATCCACCTGTAGAAGATTGGATCAGGTGTGATGATTGTAATATGTGGGCTCATGAAGCGTGCACTTCTTATTCTGGCAGAGGCAATTATTACTGTGACGCCTGTCAAGAATAA
- Protein Sequence
- MVNKYKRKTSNASWDEEVMKLAMEEASKTSVNSAAKKYGINLSTLQRHIKKGCPKKKLGRYTTIFTDSQELELLEYVFQMDGLFFGLTKKEFLELVCQYAETNNVPHPFKNGTAGEDWYSGFKTRHPDLALRRPEQRFFDLLEGEIDKHKIDATRIYNVDETGVQTNSNKPPRILSRSGKKQVGVISSVERGKLTTVVCCCNAAGAFIPPFLIFGRKRMVPRLLDGAPPGSVASCTDNGWINGPTFLDWLRHFVAMTRPTGDKKIILIMDNHVSHKYLEVLEYASKNNVIFVSLPPHTTHRLQPLDTCVYGPFKNYFEQAVSLFQRTHVGRIISQYDVARLFGEAYMKAASAHNAIKGFSSTGIWPTNRHIFDDSDYMPSSLTDRPEPVTGNEELTTIQPNESDIEIPNANAAETPSVLNEALDSTAAVAIGQTEETAPEMQSDTSSPQVAETELRLQVTEVNRPLTPEITRVNDRIQPSPPIKRHKTPLDIRPLPQMTPNVSIRKRKAQKAEILTSTPVKEEQRERENKKKIPTNTKLKAVKKNLIEPSTNENKCGKKKKQSKEVKASCSNTNKREVRSKRGPKNSQNDEAEYSCLVCAELYTHPPVEDWIRCDDCNMWAHEACTSYSGRGNYYCDACQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01178503;
- 90% Identity
- iTF_00658335; iTF_00658334; iTF_00658337; iTF_00658338; iTF_00658339; iTF_00658340; iTF_00658341; iTF_00658348; iTF_01072437; iTF_00658336;
- 80% Identity
- -