Edem048563.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- mbr-1
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010001959.1:94615-147678[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-14 1.6e-11 45.2 0.0 1 39 248 287 248 293 0.92 2 2 3.6e-18 2.5e-15 57.4 0.0 1 43 452 495 452 497 0.95
Sequence Information
- Coding Sequence
- ATGGGTCGAAGAAAATGGAAACTCTATCAAGACGCGATCTTACCCAAGCGCGACGGCGAGCCTTCCAGCGACGAGTCCATGCCTTCCACGGACCCCCCTCCAGCGTTGAAGATCAAAACCATAGAGCAAATCAACGAAGACAAGCCAGAAGACGGGAAAAGGCCAGAGACGATATTGGAAAGACTGATCAAGACACCTGCTACTGTCCCAAAGGTCGAAATGGTGGAAGAACCGTCAGACTGGAAGCCTTCGGACAAATGTTACTTCTGCGTGGAGGGTGAGGGCGGCGGGGAGGCGCggccgggcggcgcggcgAGTCCTGCCTCAGAGTCGGACAGTAGCTCTGTCTCCGGTGCAAAGAGTCCAGCCGCCGCACCCCCACAGCTGTTGCAGCACCTACTGCAGATGCAATTACAGGCCCAGAGTCCGCAGGCCATTGCACAGCTGCAGCAAATGATCGCGACGCTGGCCGCGCTGGGCACGGGGCTGGTCCCGCCAGCACTGTCGCAGGCCTGGCTGATGCAGCGGCTTACCCATCGGATGCCCGACAGGCTTCAAGAAGTGGAGAAGGCGTCAGCGCCAAGCGCCTCCCCGACCTCAGCGGAGCAGCCTCTGGACCTCAGCGCCAAGTCTACATCCAGCACGAGTGGAACACCTCCACCGGACGCCAAGGATAACGCCAGATTGAAACGCGCGATAATCGAAGGCACGGCTGGCAACAGCAGCGCGCGGCGGACTTACACCGAGGACGAGCTTCAGTCAGCCCTCCGAGATATCCAGTCCGGCCGCCTAGGCACGCGCCGAGCCGCCGTCGTTTACGGCATACCCCGCTCCACCCTCCGCAACAAAGTCAACAAGTTCGGCCTCGCGGCAGAACCGGCTGACTCCGATCCTGACTCCGACCCCGAACGACCGGACTCCCCGCCCTCCGTCATCCTTAAAATACCAACATTCCCACCCCCGGATGACAAGAGCCCGTCCCCAGCGACTGCCGCTCCAGTCGCTCCCGTAACCCCACACTTACCTCCTCAACCGCCGCTCAACACGCCATCCCCGCTTCTGCTCCCCGCATCAGTCTTCGCTGACCCGCCATCATCCCAACATCTCTTCACGTCGCTGAGCGACGTCATAGCCAAAAGCATAAGTCAGAAATTCCAGCAGCCGCTGGAACGGCCGCACCAGGACCTCTCCTTCATGCGCCATCAGGACAGACACGTGTCCGTCATTAAAACTCCACCAGATAACGCTAGAAATTTCTCAGTTCCGAGCAACTCACGAGCGCCTACGAACAACAACGGACAACCCGCTACCGGCAAGGGCACTAGACCTAAGAGAGGGAAATACAGAAACTACGATAGAGACAGTCTCGTCGAAGCAGTAAAGGCGGTACAGAGAGGAGAGATGTCGGTCCATCGCGCCGGTTCGTACTACGGCGTGCCGCATTCGACGCTCGAGTATAAAGTCAAAGAGCGGCATCTAATGAGGCCGCGCAAACGCGAGCCAAAGCCTCCTCAGGACGTGAAGCCGCAGCCGCCAAAGCCGCCGCCACCGAAGCCGATGAGCAAGCCGTTCACCAACGGCCTCAACGGGCCCGAGGCGCCCGGCTACCCGCCGAGCTACTTCTGGCCGGGCGCCGGCTTCCCCGCCCCGCCCGCGCCGGACCTGTACGCGTCGCACATGATGCGTCGGCTGCGGGAGGaggcgccgccgccggccaacGGCTCCTTCCTCGAGGGCATCATCAGGTCGAGCCTGGAGCGGCCGggcgcggcgctgctgcagCGGCTGACGGGCGagccgcggccgccggcgccgggCGCGGACGCGCCGAGCCTGCTGCGGcggctggcgggcggcggcggggacGAGGACGGGccgccggcgcggcgcgcgcgcgtcgaCTCCTCGGACCGGCAGCTGGCGGCGGAGATGCGCGAGGCGGTGCAGCGGCTGCGCGCGGACAAGCTGCGGCCGCGCAACGGCACGCCCACGCCGCCCGCGTGCGGGGcgccgtccccgccgccgcccgccgcgccgcccgaccgCGCCTAG
- Protein Sequence
- MGRRKWKLYQDAILPKRDGEPSSDESMPSTDPPPALKIKTIEQINEDKPEDGKRPETILERLIKTPATVPKVEMVEEPSDWKPSDKCYFCVEGEGGGEARPGGAASPASESDSSSVSGAKSPAAAPPQLLQHLLQMQLQAQSPQAIAQLQQMIATLAALGTGLVPPALSQAWLMQRLTHRMPDRLQEVEKASAPSASPTSAEQPLDLSAKSTSSTSGTPPPDAKDNARLKRAIIEGTAGNSSARRTYTEDELQSALRDIQSGRLGTRRAAVVYGIPRSTLRNKVNKFGLAAEPADSDPDSDPERPDSPPSVILKIPTFPPPDDKSPSPATAAPVAPVTPHLPPQPPLNTPSPLLLPASVFADPPSSQHLFTSLSDVIAKSISQKFQQPLERPHQDLSFMRHQDRHVSVIKTPPDNARNFSVPSNSRAPTNNNGQPATGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPPQDVKPQPPKPPPPKPMSKPFTNGLNGPEAPGYPPSYFWPGAGFPAPPAPDLYASHMMRRLREEAPPPANGSFLEGIIRSSLERPGAALLQRLTGEPRPPAPGADAPSLLRRLAGGGGDEDGPPARRARVDSSDRQLAAEMREAVQRLRADKLRPRNGTPTPPACGAPSPPPPAAPPDRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072366;
- 90% Identity
- iTF_00656012;
- 80% Identity
- -