Edem019099.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- Rfx2
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000327.1:105622-110545[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.11 1.9e+03 1.0 0.0 3 17 25 39 24 46 0.86 2 3 0.11 1.9e+03 1.0 0.0 3 17 75 89 74 96 0.86 3 3 3.9e-37 6.8e-33 114.6 0.0 3 78 125 200 123 201 0.97
Sequence Information
- Coding Sequence
- ATGGTTGGTCCGGACGAGGCCGTCTCCCCCATTTCCGCCCCCGTGACCCCGCCGCAGGCGCGCATGCCGCCCGCGACTGTGCAGTGGCTGTTGGACAACTATGAGACGGCTGACGGTGAGTTCCGACAGGAGTCTGTTGTCACGGTCTCTATGGTTGGTCCGGACGAGGCCGTCTCCCCCACTTCCGCCCCCGCGACCCCGCCGCAGGCGCGCATGCCGCCCGCGACTGTGCAGTGGCTGTTGGACAACTATGAGACGGCTGACGGTGAGTTCCGACAGGAGTCTGTGGTCACGGTCTCTATGGTTGGTCCGGACGAGGCCGTCTCCCCCACTTCCGCCCCCGCGACCCCGCCGCTGGCGCGCATGCCGCCCGCGACTGTGCAGTGGCTGTTGGACAACTATGAGACGGCTGACGGTGTGTCTCTCCCCCGGTCTACCCTCTACGCGCACTACTTGCGACACTGCTCGGCGCACCGCCTCGACCCCGTGAACGCGGCGTCTTTCGGCAAGCTCATACGCTCCGTATTCGTCGGGCTGCGTACCCGCCGTCTCGGCACTAGAGGCAACTCCAAGTACCACTACTATGGCATCAGgGCGAAAGCTAGCGTTTCTGCATCTCCGCCACCCGACCCTAACGACGAAAAGGCGGATGTTCAGGATATGCAGGAGTCCCGCGACCGTGACGCCGAGCCCGCCGCGCCGGCCGGCGGCGTGCCGGGCCTCGCGCACCGCCAGTACCTGGGCGCCGTGGTGGCCggctcgccgcccgcgccgcccgcgctgcccgccgccgccgagctGCCGCCGTCAGCACTCACCGCTCTTCAGGACCACCATCGGACCACCATCGGTGAGTGTAGTACAAGGGCAGGTCTAACACCGGCCGGCGGCGTGCCGGGCCTCGCGCACCGCCAGTACCTGGGCGCCGTGGTGGCCggctcgccgcccgcgccgcccgcgctgcccgccgccgccgagctGCCGCCGTCAGCACTCACCGCTCTTCAGGACCACCATCGGACCACCATCGGTGAGTGTAGTACAAGGGCAGGTCTAACACCGGCCGGCGGCGTGCCGGGCCTCGCGCACCGCCAGTACCTGGGCGCCGTGGTGGCCggctcgccgcccgcgccgcccgcgctgcccgccgccgccgagctGCCGCCGTCAGCACTCACCGCTCTTCAGGACCACCATCGGACCACCATCGGTGAGTGTAGTACAAGGGCAGGTCTAACACCGGCCGGCGGCGTGCCGGGCCTCGCGCACCGCCAGTACCTGGGCGCCGTGGTGGCCggctcgccgcccgcgccgcccgcgctgcccgccgccgccgagctGCCGCCGTCAGCACTCACCGCTCTTCAGGACCACCATCGGACCACCATCGGTGAGTGTAGTACAAGGGCAGGTCTAACACCGGCCGGCGGCGTGCCGGGCCTCGCGCACCGCCAGTACCTGGGCGCCGTGGTGGCCggctcgccgcccgcgccgcccgcgctgcccgccgccgccgagctGCCGCCGTCAGCACTCACCGCTCTTCAGGACCACCATCGGACCACCATCGGTGAGTGTAGTACAAGGGCAGGTCTAACACCGGCCGGCGGCGTGCCGGGCCTCGCGCACCGCCAGTACCTGGGCGCCGTGGTGGCCggctcgccgcccgcgccgcccgcgctgcccgccgccgccgagctGCCGCCGTCAGCACTCACCGCTCTTCAGGACCACCATCGGACCACCATCGGTGAGTGTAGTACAAGGGCAGGTCTAACACCGGCCGGCGGCGTGCCGGGCCTCGCGCACCGCCAGTACCTGGGCGCCGTGGTGGCCggctcgccgcccgcgccgcccgcgctgcccgccgccgccgagctGCCGCCGTCAGCACTCACCGCTCTTCAGGACCACCATCGGACCACCATCGGTGAGTGTAGTACAAGGGCAGGTCTAACACCGGCCGGCGGCGTGCCGGGCCTCGCGCACCGCCAGTACCTGGGCGCCGTGGTGGCCggctcgccgcccgcgccgcccgcgctgcccgccgccgccgagctGCCGCCGTCAGCACTCACCGCTCTTCAGGACCACCATCGGTGA
- Protein Sequence
- MVGPDEAVSPISAPVTPPQARMPPATVQWLLDNYETADGEFRQESVVTVSMVGPDEAVSPTSAPATPPQARMPPATVQWLLDNYETADGEFRQESVVTVSMVGPDEAVSPTSAPATPPLARMPPATVQWLLDNYETADGVSLPRSTLYAHYLRHCSAHRLDPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKASVSASPPPDPNDEKADVQDMQESRDRDAEPAAPAGGVPGLAHRQYLGAVVAGSPPAPPALPAAAELPPSALTALQDHHRTTIGECSTRAGLTPAGGVPGLAHRQYLGAVVAGSPPAPPALPAAAELPPSALTALQDHHRTTIGECSTRAGLTPAGGVPGLAHRQYLGAVVAGSPPAPPALPAAAELPPSALTALQDHHRTTIGECSTRAGLTPAGGVPGLAHRQYLGAVVAGSPPAPPALPAAAELPPSALTALQDHHRTTIGECSTRAGLTPAGGVPGLAHRQYLGAVVAGSPPAPPALPAAAELPPSALTALQDHHRTTIGECSTRAGLTPAGGVPGLAHRQYLGAVVAGSPPAPPALPAAAELPPSALTALQDHHRTTIGECSTRAGLTPAGGVPGLAHRQYLGAVVAGSPPAPPALPAAAELPPSALTALQDHHRTTIGECSTRAGLTPAGGVPGLAHRQYLGAVVAGSPPAPPALPAAAELPPSALTALQDHHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -