Ebru067651.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977963.1:17291397-17299989[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00063 7.8 8.7 0.5 8 44 204 240 200 244 0.89 2 7 0.0036 45 6.3 0.0 21 44 245 268 240 277 0.86 3 7 0.045 5.7e+02 2.7 0.0 22 48 274 299 271 301 0.84 4 7 0.00038 4.8 9.4 0.0 17 47 297 327 284 333 0.82 5 7 0.34 4.2e+03 -0.0 0.0 21 47 329 355 325 362 0.82 6 7 0.0015 19 7.4 0.0 21 48 385 412 374 418 0.84 7 7 0.46 5.8e+03 -0.5 0.0 21 43 413 435 405 439 0.75
Sequence Information
- Coding Sequence
- ATGGAGGCACCGCGGGCAGGGGGGGTGAAGGTGGAGCCCGCGGGGGAGGGGGAGGGCGAGGAGCGAGCTCGAGGAGAGCATGTTGCGGTGTGGGAGTGTTCGCAGGCCGGGGCTGTGTGTGTGAAGCACGAGGCACTTGAGGCAGGGGACGTAAAGCAGGAGCCTGTGAAAGATGACCTGACGAACAAGTTGTCTCCGCCCCAAGTGGTGCCACACAGCTCGATGTTTGCGGGACATATGTGCGTCACCGTGAAGGTGGAGTTCGAGCCGGGGGCGGGGGAGGGGGCGGTGGAGGTGGCGGGGGAGGGGGAGGGCCGGAGAGAGACGGCAGACGTGTGCGGGAGCGAGACAACGCACCCGCCGGAACATGACCCGCGAGGAGATGTGGTGGAGACAGATAAGCGTCCAGTGGCCGTAGCGGTGCGAGTCAAGGTGGAGGCTGTGGACGTGGAACAACCTGTGAACGTGGAACAACCTGTGTGTGTGGAACAGGCGGCTGTGTGCGCGCAGCGGGAGTTGTGCGCGGGGCACGCGGCGCGGGGCACGCTCGTGGCGGGGCCCGCGCTCGAGCCGGGGCACGCGGGCGTGGCGGGGCACGCGGGCGTGCAGCGACCGCACACAACAGACTCGTGTGTGTCGGCGCGACAGGACAGAGAGCCACACACGTGTGACGTGTGCACGAAGACCTTCAAGTCGTCAAGCATATTAAAGGAACATATGCGGAGTCACACAGGAGAGAAACCCTTTCACTGCGAAATGTGCGAGAAACGGTTCACGACGTCGGGCAACTTAAAGAGACACGAACACATACACACTGGTGAAAAATCATACTCCTGTGGACTATGTTCAAAACTGTTCAGGCATTCCAATGCTCTAAAGGACCATGAACGTCGTCACACTGGAGAGAAACCGTATTCTTGTAAAGTATGTAACAAGGCGTTCACGGAATCGGGTAACTTGAAGAAACACGAGCGGATACACACTGGGGAGAAACCGTATTCGTGTGAAACGTGTAAGAAAGAGTTTAAGGACTGGGGCAATTTGAAGAGCCACGAACGTATTCACACTGGAATAAAGCCCTATTCCTGCGAAGTATGTAAGAAAGAGTTCACCGGGCTGGGTAATTTTAAGAGGCACGAACGTATTCATACTGGTGAAAAACCATACTCGTGTAAAATATGTGGACAAAAGTTCACGCAGTCCAACAGCTTGAAGGAGCACACGCGGATCCATACAGGAGAAAAACCCTTCTCGTGCAGCATGTGTAATAAAGAGTTTTCGGCGTTGGGGACTCTAAAGAGACATGAACGAATACACGCTCGGATCACAAGCAGCGTCTCACCGCGCGTGCACTCGACGTGGTCGGGGGACTGA
- Protein Sequence
- MEAPRAGGVKVEPAGEGEGEERARGEHVAVWECSQAGAVCVKHEALEAGDVKQEPVKDDLTNKLSPPQVVPHSSMFAGHMCVTVKVEFEPGAGEGAVEVAGEGEGRRETADVCGSETTHPPEHDPRGDVVETDKRPVAVAVRVKVEAVDVEQPVNVEQPVCVEQAAVCAQRELCAGHAARGTLVAGPALEPGHAGVAGHAGVQRPHTTDSCVSARQDREPHTCDVCTKTFKSSSILKEHMRSHTGEKPFHCEMCEKRFTTSGNLKRHEHIHTGEKSYSCGLCSKLFRHSNALKDHERRHTGEKPYSCKVCNKAFTESGNLKKHERIHTGEKPYSCETCKKEFKDWGNLKSHERIHTGIKPYSCEVCKKEFTGLGNFKRHERIHTGEKPYSCKICGQKFTQSNSLKEHTRIHTGEKPFSCSMCNKEFSALGTLKRHERIHARITSSVSPRVHSTWSGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00657527;
- 90% Identity
- iTF_00657527;
- 80% Identity
- iTF_00657527;