Basic Information

Insect: Epinotia brunnichana
Gene Symbol: slc12a9
Assembly: GCA_963854355.1
Location: OY977959.1:594309-618746[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0012 15 7.8 0.0 32 52 200 219 198 221 0.89

2 7 0.0012 15 7.8 0.0 32 52 282 301 280 303 0.89

3 7 0.0012 15 7.8 0.0 32 52 364 383 362 385 0.89

4 7 0.0012 15 7.8 0.0 32 52 446 465 444 467 0.89

5 7 0.0012 15 7.8 0.0 32 52 528 547 526 549 0.89

6 7 0.0012 15 7.8 0.0 32 52 610 629 608 631 0.89

7 7 0.0012 15 7.8 0.0 32 52 692 711 690 713 0.89

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0012	15	7.8	32	52	200	219	198	221	0.89
2	7	0.0012	15	7.8	32	52	282	301	280	303	0.89
3	7	0.0012	15	7.8	32	52	364	383	362	385	0.89
4	7	0.0012	15	7.8	32	52	446	465	444	467	0.89
5	7	0.0012	15	7.8	32	52	528	547	526	549	0.89
6	7	0.0012	15	7.8	32	52	610	629	608	631	0.89
7	7	0.0012	15	7.8	32	52	692	711	690	713	0.89

Sequence Information

Coding Sequence: ATGTGCGAGCCGCGTGACTCATGCGCTGCGGGCGCTGTGCGAGTTGTCTGTGAGGGAGGTTTGTTTGTCCTGGGTCACGTGCGAGTGGGCGAGTTGGACGGCAGTGGGGACCCGCTCGCCGAGGAACACAAGTACTGGCTCAAGCTCATCGACCATCTCAAGGTGAAAGCCTTCGTAGAGTTGTGTCTAGCGCCGTCTGTGCGCAGTGGAGCCGCGCAGTTGACCCGCCTGGCGGGTCTCGGCGCCATGAAGCCTGACACCGTACTACTGGGCTTCCGGGACCAGGCGCCACCCAGGGACTTCTTTAGGGATCCAAACTCCCCATACAAAACGGAGCAATTCGACACAGAGACCGGCGACATGTTCCCTCTCCGAGGCGCGGACTCCAAACTCAGCGCTCCCGAGTATATACGCGTGGTGGCTGACGTGCTCAGCGTGAGCAAGAACGTGGGCCTGTGCAGGCACTTCCACAAGCTGGACATGGCCGCGGTTGAACGGAAATCAGCGTCGCTAAAATACATCGATGTGTGGCTAGTAGAGCCGCTAGCAGCGCACGGCTGCTTCACAGTCCGGGCGCTGTTCGCTCTACAGCTCAGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGGTGAGTAGTAAATACATCGACGTGTGGCTAGTAGAGCACGGCTGCTTCACAGTCCGGGCGCTGTTCGCTCTACAGCTCAGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGGTGAGTAGTAAATACATCGACGTGTGGCTAGTAGAGCACGGCTGCTTCACAGTCCGGGCGCTGTTCGCTCTACAGCTCAGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGGTGAGTAGTAAATACATCGACGTGTGGCTAGTAGAGCACGGCTGCTTCACAGTCCGGGCGCTGTTCGCTCTACAGCTCAGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGGTGAGTAGTAAATACATCGACGTGTGGCTAGTAGAGCACGGCTGCTTCACAGTCCGGGCGCTGTTCGCTCTACAGCTCAGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGGTGAGTAGTAAATACATCGACGTGTGGCTAGTAGAGCACGGCTGCTTCACAGTCCGGGCGCTGTTCGCTCTACAGCTCAGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGGTGAGTAGTAAATACATCGACGTGTGGCTAGTAGAGCACGGCTGCTTCACAGTCCGGGCGCTGTTCGCTCTACAGCTCAGCGCCGTCGTGCGCTCCGCGCGAGGCTGGCGGCATCTACAGCTGCGAGTGTTTAGCAAGCCGGAGCCAGTGCAGGGCGTACTCGAAGCCGGAAGAACGTTGCCAGTGGGCGACGACTCGTCCCTAGACCCGAGTATAGCTAACTTAGCCCCGGGCAGGCCTGTGCAGGAGCGGCTACAGCATCTGTTGAGGCTGCTGCGCATCAACGCGGCGGCGCACGTGGTTAAAGCCGGCAGAACGTTGCCAGTGGGCGACGACTCGTCCCTAGACCCGAGTATAGCTAACTTAGCCCCGGGCAGGCCAGTGCAGGAGCGGCTACAGCATCTGTTGAGGCTGCTGCGCATCAACGCGGCGGCGCACGTGGTTAAAGCCGGCAGAACGTTGCCAGTGGGCGACGACTCGTCCCTAGACCCGAGTATAGTTAACTTAGCCCCGGGCAGGCCTGTGCAGGAGCGGCTACAGCATCTGTTGAGGCTGCTGCGCATCAACGCGGCGGCGCACGTGGTTAAAGCCGGCAGAACGTTGCCAGTGGGCGACGACTCGTCCCTAGACCCGAGTATAGCTAACTTAGCCCCGGGCAGGCCTGTGCAGGAGCGGCTACAGCATCTGTTGAGGCTGCTGCGCATCAACGCGGCGGCGCACGTGGTTAAAGCCGGCAGAACGTTGCCAGTGGGCGACGACTCGTCCCTAGACCCGAGTATAGCTAACTTAGCCCCGGGCAGGCCTGTGCAGGAGCGGCTACAGCATCTGTTGAGGCTGCTGCGCATCAACGCGGCGGCGCACGTGGTTAGTGCACTCTCTGTTGCGTGTGTTCATACATCGTCAATCTCCAGAAGCCGGCAGAACGTGGCCAGTGGGCGACTACTCGTCCCTAGACCCGAGTATAGCTAA
Protein Sequence: MCEPRDSCAAGAVRVVCEGGLFVLGHVRVGELDGSGDPLAEEHKYWLKLIDHLKVKAFVELCLAPSVRSGAAQLTRLAGLGAMKPDTVLLGFRDQAPPRDFFRDPNSPYKTEQFDTETGDMFPLRGADSKLSAPEYIRVVADVLSVSKNVGLCRHFHKLDMAAVERKSASLKYIDVWLVEPLAAHGCFTVRALFALQLSAVVRSARGWRHLQLRVFSKPEPVQGVLAPSCAPREAGGIYSCECLASRSQCRAYSVSSKYIDVWLVEHGCFTVRALFALQLSAVVRSARGWRHLQLRVFSKPEPVQGVLAPSCAPREAGGIYSCECLASRSQCRAYSVSSKYIDVWLVEHGCFTVRALFALQLSAVVRSARGWRHLQLRVFSKPEPVQGVLAPSCAPREAGGIYSCECLASRSQCRAYSVSSKYIDVWLVEHGCFTVRALFALQLSAVVRSARGWRHLQLRVFSKPEPVQGVLAPSCAPREAGGIYSCECLASRSQCRAYSVSSKYIDVWLVEHGCFTVRALFALQLSAVVRSARGWRHLQLRVFSKPEPVQGVLAPSCAPREAGGIYSCECLASRSQCRAYSVSSKYIDVWLVEHGCFTVRALFALQLSAVVRSARGWRHLQLRVFSKPEPVQGVLAPSCAPREAGGIYSCECLASRSQCRAYSVSSKYIDVWLVEHGCFTVRALFALQLSAVVRSARGWRHLQLRVFSKPEPVQGVLEAGRTLPVGDDSSLDPSIANLAPGRPVQERLQHLLRLLRINAAAHVVKAGRTLPVGDDSSLDPSIANLAPGRPVQERLQHLLRLLRINAAAHVVKAGRTLPVGDDSSLDPSIVNLAPGRPVQERLQHLLRLLRINAAAHVVKAGRTLPVGDDSSLDPSIANLAPGRPVQERLQHLLRLLRINAAAHVVKAGRTLPVGDDSSLDPSIANLAPGRPVQERLQHLLRLLRINAAAHVVSALSVACVHTSSISRSRQNVASGRLLVPRPEYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -