Basic Information

Insect: Epinotia brunnichana
Gene Symbol: -
Assembly: GCA_963854355.1
Location: OY977963.1:6813788-6818015[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.3e-05 0.012 18.0 0.1 1 23 167 190 167 190 0.95

2 12 0.048 6.2 9.5 4.1 1 23 194 216 194 217 0.95

3 12 0.0018 0.23 13.9 0.3 1 23 223 246 223 246 0.97

4 12 0.013 1.7 11.3 4.8 1 23 252 274 252 274 0.99

5 12 0.0021 0.27 13.7 0.4 2 23 282 304 281 304 0.96

6 12 2.3e-06 0.00029 23.1 1.7 1 23 310 332 310 332 0.98

7 12 0.011 1.4 11.5 1.2 1 23 338 360 338 360 0.98

8 12 5.9e-05 0.0075 18.6 2.1 1 23 365 387 365 387 0.99

9 12 0.0001 0.013 17.9 2.6 1 23 393 415 393 415 0.96

10 12 2.3e-05 0.003 19.9 2.8 1 23 421 444 421 444 0.96

11 12 0.00021 0.026 16.9 1.4 1 23 478 500 478 500 0.97

12 12 0.00017 0.021 17.2 1.2 1 23 506 529 506 529 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.3e-05	0.012	18.0	0.1	1	23	167	190	167	190	0.95
2	12	0.048	6.2	9.5	4.1	1	23	194	216	194	217	0.95
3	12	0.0018	0.23	13.9	0.3	1	23	223	246	223	246	0.97
4	12	0.013	1.7	11.3	4.8	1	23	252	274	252	274	0.99
5	12	0.0021	0.27	13.7	0.4	2	23	282	304	281	304	0.96
6	12	2.3e-06	0.00029	23.1	1.7	1	23	310	332	310	332	0.98
7	12	0.011	1.4	11.5	1.2	1	23	338	360	338	360	0.98
8	12	5.9e-05	0.0075	18.6	2.1	1	23	365	387	365	387	0.99
9	12	0.0001	0.013	17.9	2.6	1	23	393	415	393	415	0.96
10	12	2.3e-05	0.003	19.9	2.8	1	23	421	444	421	444	0.96
11	12	0.00021	0.026	16.9	1.4	1	23	478	500	478	500	0.97
12	12	0.00017	0.021	17.2	1.2	1	23	506	529	506	529	0.97

Sequence Information

Coding Sequence: ATGACGGAAATTTGGAGTTTGGACGCTCTCTGTCGATGCTGCCACGCCGATGGCGACTTTAAAGATTTACGGGCGATGTATGTTTTTGATAACGTTCCCGAAAATTATCTAGGCATGCTACTAGAAACCTTGGGAGTTACGATAAAACCTCCTCCTGTAAATGCCAGCTACTCCATCTGCGATGCATGCATAAACCAGCTCCGGAGTGCGACCAATTTCAAGAAGTTGGTACTTGACTGTGAGACCAAGTTTGAAGAGTACTGTAAAAATGAATCGTCACAAAATTATGATATTAAAACTGAGCCAGAATATTTAGATGATCCCGATGATAATGACTATGCCGATAACCACATCGAGATCTCGATAGACGTGAAACCGAAGATAGAGGGCAAGTCGACCAAGAAGAAAAACAAACCATCTCTCAAAGTTAAATCAAAAAGCAAGCCAAAAGAAGAAGAATCATTAGTAGTCACAGTGAAAACCGAATCCGGAGAGCTATATTCTTGCAAAAACTGCGGCGTCAGCTACGACACTCTAGACGAACTCAACCAACATATCAATGACGAACATTTCACAGGATTCAAATGCATGTACTGCCCCGAACAGTTTAAAACCGAGAATAGGTATAAGATCCATAATCGCCTGCACCATAACGACACGAAACCGTTCCCGTGCGACCATTGTGGAAAGAAACTGAGCGCGAAATTGAGCCTTgtcgaacacattaactctgtGCATACTAAGGAGGTTTATTATCAATGCGATCGGTGCTTAAAAAAGTTTCACAACAAGCAAGTATTGAGGATACATCTTAAGAAACATGACGGTACGTTTAGGAAGTTAATCTGTGAGCAGTGCGGGGTAGGTTGCAATGATCGTACTAACTTAAGGTACCATGTCATGACTGTCCATGAtaagttgagattatttaactGCGAGGAATGTGGCAAAAAGTTCTCAGCAGCGAAACATTTGAAGGTACACTTGAGGTCCCATACTGGTGAAAGGCCTTTTGAGTGCGATATTTGTTGTAACGCTTTCGCCTCGAAAGACGCTTTGACtgttcacaaaaaaaaacatgataaaaGTGGCTACAAATGCAAAACTTGCGGCCAATTCTTCCCAACGAGAGGCCTATACGCTTCTCATTACAGAAAACACGTCAGCAGTAAGCCATATAAATGTCATCTTTGTAGTAAAGAATTTGCGGGGAGATATTCTTTGAATCGGCACATTTTCGAGCATACAGGAGCACGGCCGTTCAACTGTAGTTTGTGCGGTAAAGATTTCAAACAGAAAACCCAGTTAGTCAGACATAATAGGCGCTTCCACGACCCGAATAAGCCAGAAGTTATTAAAACAAAGTGTGATTTATGTAAAAGAACTGTTCCTCATATAGAAAAACATATGTTGGCTCACTCTAATAAGCCGTTTGCGTGCCATTTATGCGAGAAGAGATATCCTGAGCAGAATGCACTAAACAGACATTTGCAAAGACATACAGGTGTCAAGCCTCATCAATGCACATTGTGTGATAAAGGTTATATACAGTTGAAAAGTCTTAGAGGCCATATGATGAAAGTACATAAATTACCTTTGAAAACTGAGCAGGAAGATCATTATGACAGTGTTGTTACTACTTATACGATTCAGAATTTGAAAAGGAAGTGA
Protein Sequence: MTEIWSLDALCRCCHADGDFKDLRAMYVFDNVPENYLGMLLETLGVTIKPPPVNASYSICDACINQLRSATNFKKLVLDCETKFEEYCKNESSQNYDIKTEPEYLDDPDDNDYADNHIEISIDVKPKIEGKSTKKKNKPSLKVKSKSKPKEEESLVVTVKTESGELYSCKNCGVSYDTLDELNQHINDEHFTGFKCMYCPEQFKTENRYKIHNRLHHNDTKPFPCDHCGKKLSAKLSLVEHINSVHTKEVYYQCDRCLKKFHNKQVLRIHLKKHDGTFRKLICEQCGVGCNDRTNLRYHVMTVHDKLRLFNCEECGKKFSAAKHLKVHLRSHTGERPFECDICCNAFASKDALTVHKKKHDKSGYKCKTCGQFFPTRGLYASHYRKHVSSKPYKCHLCSKEFAGRYSLNRHIFEHTGARPFNCSLCGKDFKQKTQLVRHNRRFHDPNKPEVIKTKCDLCKRTVPHIEKHMLAHSNKPFACHLCEKRYPEQNALNRHLQRHTGVKPHQCTLCDKGYIQLKSLRGHMMKVHKLPLKTEQEDHYDSVVTTYTIQNLKRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00659643;
90% Identity: iTF_00656379;
80% Identity: -