Ebru059441.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977958.1:13348789-13352276[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0041 0.52 12.8 0.7 1 23 77 100 77 100 0.95 2 18 4.4 5.6e+02 3.3 0.0 2 23 126 148 125 148 0.82 3 18 0.0027 0.35 13.4 1.2 2 23 172 193 171 193 0.97 4 18 0.0014 0.18 14.3 0.5 1 23 197 219 197 219 0.97 5 18 0.0061 0.78 12.3 0.5 1 23 226 249 226 249 0.97 6 18 0.0024 0.31 13.5 1.3 2 23 257 279 256 279 0.95 7 18 2.2e-06 0.00027 23.1 0.9 2 23 285 307 284 307 0.97 8 18 2 2.6e+02 4.4 1.0 1 23 313 336 313 336 0.89 9 18 1.7e-05 0.0022 20.3 1.6 1 23 342 365 342 365 0.98 10 18 0.34 43 6.8 0.1 3 23 484 505 483 505 0.95 11 18 0.00047 0.06 15.8 0.3 2 23 528 549 527 549 0.96 12 18 0.29 37 7.0 3.0 1 23 553 575 553 575 0.95 13 18 0.036 4.6 9.9 1.3 1 23 580 603 580 603 0.91 14 18 0.069 8.8 9.0 2.7 2 21 611 630 610 631 0.94 15 18 0.00075 0.095 15.2 3.3 2 23 641 663 640 663 0.96 16 18 3e-05 0.0038 19.6 1.4 3 23 671 691 669 691 0.96 17 18 3.7e-06 0.00047 22.4 1.9 1 23 697 719 697 719 0.99 18 18 0.00013 0.017 17.5 2.8 1 23 725 748 725 748 0.97
Sequence Information
- Coding Sequence
- ATGACTGATGAGGGAAAGAAAACTAAAATGGAGAAAAGGAAGGAAACACTACGCGACACCGGAGCGACTAAAAAACGGAAAAAGGCATTAAAGGAGGAAAATGAGGGTGCTCCTAAAACGGTGTTCCGGGAAAAACACATGCCCGAGATGCAGAAACAGTGGCACAACCTGACGACCTTGCTCAAGTACTCTAACGCGACGCCCTTTAAGGACAGGAACGATGCGGGCTACATTTGCGCGTACTGTTTCAAAACCTACCCCGACCCTGAGGTCTTGCGGCACCACACACAAAACGACCATGTCAAAGAGAAGCCAACCTATAAAGCTGGCTCCGGAATGAGCAGCTTCGTCGCTTTCCTCGACATTGTAGACCTGAAATGCACTATCTGCAATATCTCCATCGAAAACTTAAATGAACTACCCGAACATCTGGTCAAAGTCCACGACAAAAAATACTTCCTCGGCGTCACCGATTACTTCCAACCGTTCAAACTGACTAACGAACAGCAGATCAAATGCTCTCTGTGCTCCGAAGCATTCCACAACATGAAGTTGCTCATGCAACACATGAATGTCCACTACAGGAACTTCATCTGCACGACCTGTGGCGCCGGGTTTGTGAACAGCTTCAGACTTAACAGGCATGAGACCACGCATGGGAAGAAAAAGTCCAGCTTCCCTTGTCGGCATTGTGGCCAGGTTTTTGCAGCCGAGTCCAAGAAAAAGGCCCATGTCAATACTGAACATAAAGGCATAGCTGGGGACAGCGTGTGTCAGATATGCAAGGCGCGGTTTAAGAATTACTACCAGAAAACTAGACACATGATGCAGGTCCACAATGTCGAGGGGATAAAGTGTGATATGTGTgataaaaagtttaatttaaaatcaaaTCTCATGCTACACATGAGGAGCGTACATCTAAAGGAAAGACCTTATGAATGTTCCGTCTGCAGCATGGGCTTTTTCATTAAAAGGCATATGTTAGGGCATTATATGGCGACACATACTAATGAGAGGAAGTTTAAATGTGACGTCTGTGGCAAAGCATACGCTACTCAGAACAGCAGACGGAAACATATGAAGAAGAATCACGgtatcGCCAGCCGAGCGATAATAGATAAGAGCGCGAGTAACAACAGATACAAAACCAAAGACAGGTTAGAATCCAGTCCGGAAACGAATAGGAACGATACGTATAATTCTAAAGACATTCATAAACATTTGAAGAATGTAAGAAACATACTGCGCTATTCTAACGCTACTCCGatacgtcgacacgctggcttAGGATACGGCTGTGCCTTCTGCGACGCTCAGCACAAACTGCCCAAAGACCTGAAGCAACACACATTAGAACACCACACCGATAATTCACAAATTAGTAAATTCATGATAAGGGAACCACTTTGCTCATTCGCGCCTAAACTGGACCTAACCTCCCTGCTCTGTACAGTGTgtgacactgaaataaatgaccTAGAACAATTACTTGTTCATCTAAAAGACGACCACGACAAAGAAGTTTACACTGACATAAACAATCACATAATACCGTTAAAATTTAAAAGCGACGTCTTGAAATGCGCCATATGCGATAAAGAGTTTGCGTACTTTAAAAAGCTGCAGGAACACATAAGCGTACATTACAGGAACTTCTTATGCAACATTTGCAGTGCGCCGTTCATGTGCAAATCTTCCCTGCAAAGGCACAAATCCAGACACAAACAGGGAGAGTTCCAGTGCAGCATGTGCGAAAGAGTTTTCGACACGAAAGTAAAGAAGAACGATCATGAAAAATTCGTCCATTTGGGTGACTACAGGAGAAGTAAATGTCCTCATTGCTCGGAGAAATTCGTGAACCACGATAAGCGAATGCAGCATATGACTAAAGTTAACGGGGAGAAACCGTTAGAATTGAAATGTACATCGTGCTCGCTTACGTTTAATAGCCGACGCAATCTCACGAAACATACGAAGCGGGACCATCTGAAGGAACGGCCACATCTATGTCCCGTGTGCGGCAAAAGTTTCTTCGTCAAAAGGGGATTGACGCAACATATGCTGAAGCATACGGGGGAAAAAACATACACTTGCGACATATGTCATAAAGCGTACGGGAGAAAAAACACATTACGTGAGCACATGAGAATACACATAGACGACAGGAGGTTTAAATGCAAGACGTGTGGCCAGGCGTTCATTCAGAAGTGTAGCTTGAGAGGTCATATGGTGACGAAACACGGGCAACCGCTTTAG
- Protein Sequence
- MTDEGKKTKMEKRKETLRDTGATKKRKKALKEENEGAPKTVFREKHMPEMQKQWHNLTTLLKYSNATPFKDRNDAGYICAYCFKTYPDPEVLRHHTQNDHVKEKPTYKAGSGMSSFVAFLDIVDLKCTICNISIENLNELPEHLVKVHDKKYFLGVTDYFQPFKLTNEQQIKCSLCSEAFHNMKLLMQHMNVHYRNFICTTCGAGFVNSFRLNRHETTHGKKKSSFPCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCDKKFNLKSNLMLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYMATHTNERKFKCDVCGKAYATQNSRRKHMKKNHGIASRAIIDKSASNNRYKTKDRLESSPETNRNDTYNSKDIHKHLKNVRNILRYSNATPIRRHAGLGYGCAFCDAQHKLPKDLKQHTLEHHTDNSQISKFMIREPLCSFAPKLDLTSLLCTVCDTEINDLEQLLVHLKDDHDKEVYTDINNHIIPLKFKSDVLKCAICDKEFAYFKKLQEHISVHYRNFLCNICSAPFMCKSSLQRHKSRHKQGEFQCSMCERVFDTKVKKNDHEKFVHLGDYRRSKCPHCSEKFVNHDKRMQHMTKVNGEKPLELKCTSCSLTFNSRRNLTKHTKRDHLKERPHLCPVCGKSFFVKRGLTQHMLKHTGEKTYTCDICHKAYGRKNTLREHMRIHIDDRRFKCKTCGQAFIQKCSLRGHMVTKHGQPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00658734;
- 90% Identity
- iTF_00656385;
- 80% Identity
- -