Ebil028432.1
Basic Information
- Insect
- Epinotia bilunana
- Gene Symbol
- -
- Assembly
- GCA_947049265.1
- Location
- CAMRIQ010000350.1:205546-209290[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0036 0.29 12.8 0.7 1 23 110 133 110 133 0.95 2 18 3 2.4e+02 3.6 0.1 2 23 159 181 158 181 0.87 3 18 0.11 8.7 8.1 2.9 2 23 205 226 204 226 0.97 4 18 0.0013 0.1 14.2 0.5 1 23 230 252 230 252 0.97 5 18 0.01 0.84 11.3 0.4 1 23 259 282 259 282 0.97 6 18 0.0022 0.17 13.5 1.3 2 23 290 312 289 312 0.95 7 18 1.9e-06 0.00015 23.1 0.9 2 23 318 340 317 340 0.97 8 18 2.5 2e+02 3.8 1.1 1 23 346 369 346 369 0.89 9 18 1.5e-05 0.0012 20.2 1.6 1 23 375 398 375 398 0.98 10 18 0.74 60 5.5 0.1 3 23 517 538 516 538 0.96 11 18 0.00041 0.034 15.7 0.3 2 23 561 582 560 582 0.96 12 18 1.6 1.3e+02 4.5 3.4 1 23 586 608 586 608 0.94 13 18 0.032 2.6 9.8 1.3 1 23 613 636 613 636 0.91 14 18 0.027 2.2 10.0 4.2 2 23 644 666 643 666 0.96 15 18 0.0001 0.0082 17.6 3.9 2 23 674 696 673 696 0.96 16 18 0.00026 0.021 16.4 4.8 3 23 704 724 702 724 0.96 17 18 3.2e-06 0.00026 22.4 1.9 1 23 730 752 730 752 0.99 18 18 0.00054 0.044 15.4 1.9 1 23 758 781 758 781 0.97
Sequence Information
- Coding Sequence
- ATGGCAACAGCAGGTCGTAGACAGGGTGCGGGGCGCAAACGTCAACCGATCTACCAATCAGGCGCTCGACACGTCGCATCTCACCGCCCCCTCCCGCGGACACCTAAAATTCGCTTCTGCGAAGCCAAGGTCATTTGCTCCAGTTTGCCGTGCGACACCGGAGCGACTAAAAAACGGAAAAAGGCATTAAAGGAGGAAAATGAGGGTGCTCCTAAAACGGTGTTCCGGGAAAAACACATGCCCGAGATGCAGAAACAGTGGCACAACCTGACGACCTTGCTCAAGTACTCTAACGCGACGCCCTTTAAGGACAGGAACGATGCGGGCTACATTTGCGCGTACTGTTTCAAAACCTACCCCGACCCTGAGGTCTTACGGCACCACACACAAAACGACCACGTAAAAGAGAAGCCAACCTATAAAGCGGGCTCCGGAATGAGCAGCTTCGTCGCTTTCCTCGACATTGTCGACCTGAAATGCACTCTCTGCAATATCTCCGTCGAAAACCTAAAGGAACTGCCCGAACATCTAGTCAAAGTCCacgacaaaaaatatttcctcGGCGTAACCGATTACTTCCAACCGTTCAAACTGACTAACGAGCAGCAGATCAAATGCTGTCTGTGCAGCGAAGCATACCACAACATGAAGTTGCTTATGCAGCACATGAACGTTCACTACAGGAACTTCATCTGCACGACCTGTGGGGCCGGGTTTGTGAACAGCTTCAGACTTAACAGGCATGAGACCACGCATGGGAAGAAAAAGTCCAGCTTCCCTTGTCGGCATTGTGGTCTGGTTTTTGCAGCCGAGTCCAAGAAGAAGGCCCATGTCAATACTGAGCATAAAGGCATTGCTGGGGACAGCGTGTGTCAGATATGCAAGGCGCGGTTTAAGAATTACTACCAGAAAACTAGACATATGATGCAGGTCCACAACGTCGAGGGTATAAAGTGTGATATGTGTGataaaaagtttaatttaaaatcaaatCTCATGCTACACATGAGGAGTGTACATCTAAAGGAAAGACCTTTTGAATGTTCAGTCTGCAGCATGGGGTTTTTCATTAAAAGGCATATGTTAGGGCATTATATGGCGACACATACCAATGAGAGGAAGTTCAAATGTGACGTCTGTGGAAAAGCATACGCTACTCAGAACAGCAGACGGAAACATATGAAGAAAAATCACGGTATCGCCAGCCGAGCGATTATAAATAAGAACGTGAGTGACGACAAAGACACAACCAAAGACAGGTTAGAAGCCAGTCCGGAAACGAATAAGACCGATACGTATAATTCTAAGGACATTCATAAACATTTGAAGAATGTAAGAAATATACTGCGCTATTCTAACGCTACTCCCATACGCCGACACACTGGCTTGGGATACCGCTGTGCCTTCTGCGACGCCCAGCACAAGCTGCCCAAAGACCTGAAGCAACACACATTAGAACACCACAACGATAATTCACAAATTAGTAAATTCATGAAAAGGGAACCACTTTGTTCATTCGCGCCTAAACTGGACTTAACCTCCCTACTCTGTACACTGTGTGACACAGAAATAACTGAACTAGAACAATTACTTGTTCATTTAAAAAACGAACACGACATAGAAGTTTACACCGACGTAAACAATCATATAATACCGTTAAAATTTAACAGTGACGTTTTGAAATGCGCCATTTGCGATAAAGAGTTTGCATACTTTAAAAAACTGCAGGAACACATAAGCGTACATTACAGGAACTTCTTATGCAACATTTGCAGTGCGCCGTTCATGTGCAAATCTTTCCTGCAAAGGCACAAATCCAGACACAAACAAGGAGAGTTCCAGTGCAGCATGTGCGAAAGAGTTTTCGACACTAAAGTAAAGAAGAACGATCACGAAAAATTCGTCCATTTGGGTGACTACCGGAGAAGTAAATGCCCGCATTGCTCGCAGAAATTCGTTAACCACGATAAGCGAATGCAGCACATGGCTAAAGTTCACGGGGAAAAACCGTTAGAACTGAAATGTACATCGTGCTCGCGTACGTTCAGTAGCCGACGCAATCTCACGAAACACACGAAGCGGGACCACCTCAAGGAGCGGACACATCTTTGTCCCATGTGCAACAAAAGTTTCTTTGTCAAAAGGGAATTGACGCATCATATGCTGAAGCATACGGGGGAAAAAACATACACTTGCGACATATGTCATAAAGCGTACGGAAGGAAAAACACATTACGTGAGCACATGAGAATACACATAGACGACAGGAGGTTCAAATGCAAGGCGTGTGGCCAGGCGTTCATTCAGAAGTGTAGCTTGAGAGGTCACATGGTGACGAAACACGGGCAACCGCTTTAG
- Protein Sequence
- MATAGRRQGAGRKRQPIYQSGARHVASHRPLPRTPKIRFCEAKVICSSLPCDTGATKKRKKALKEENEGAPKTVFREKHMPEMQKQWHNLTTLLKYSNATPFKDRNDAGYICAYCFKTYPDPEVLRHHTQNDHVKEKPTYKAGSGMSSFVAFLDIVDLKCTLCNISVENLKELPEHLVKVHDKKYFLGVTDYFQPFKLTNEQQIKCCLCSEAYHNMKLLMQHMNVHYRNFICTTCGAGFVNSFRLNRHETTHGKKKSSFPCRHCGLVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCDKKFNLKSNLMLHMRSVHLKERPFECSVCSMGFFIKRHMLGHYMATHTNERKFKCDVCGKAYATQNSRRKHMKKNHGIASRAIINKNVSDDKDTTKDRLEASPETNKTDTYNSKDIHKHLKNVRNILRYSNATPIRRHTGLGYRCAFCDAQHKLPKDLKQHTLEHHNDNSQISKFMKREPLCSFAPKLDLTSLLCTLCDTEITELEQLLVHLKNEHDIEVYTDVNNHIIPLKFNSDVLKCAICDKEFAYFKKLQEHISVHYRNFLCNICSAPFMCKSFLQRHKSRHKQGEFQCSMCERVFDTKVKKNDHEKFVHLGDYRRSKCPHCSQKFVNHDKRMQHMAKVHGEKPLELKCTSCSRTFSSRRNLTKHTKRDHLKERTHLCPMCNKSFFVKRELTHHMLKHTGEKTYTCDICHKAYGRKNTLREHMRIHIDDRRFKCKACGQAFIQKCSLRGHMVTKHGQPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00658734;
- 90% Identity
- iTF_00657501;
- 80% Identity
- -