Ebru048517.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977952.1:1959303-1962382[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.19 1.5e+03 0.8 0.0 25 41 12 28 8 30 0.82 2 15 0.18 1.5e+03 0.9 0.0 25 41 75 91 70 93 0.83 3 15 0.17 1.4e+03 1.0 0.0 25 41 138 154 133 157 0.83 4 15 0.18 1.5e+03 0.9 0.0 25 41 201 217 196 219 0.83 5 15 0.17 1.4e+03 1.0 0.0 25 41 264 280 259 283 0.83 6 15 0.18 1.5e+03 0.9 0.0 25 41 327 343 322 345 0.83 7 15 0.18 1.5e+03 0.9 0.0 25 41 390 406 385 408 0.83 8 15 0.18 1.5e+03 0.9 0.0 25 41 453 469 448 471 0.83 9 15 0.18 1.5e+03 0.9 0.0 25 41 516 532 511 534 0.83 10 15 0.17 1.4e+03 1.0 0.0 25 41 579 595 574 598 0.83 11 15 0.17 1.4e+03 1.0 0.0 25 41 642 658 637 661 0.83 12 15 0.18 1.5e+03 0.9 0.0 25 41 705 721 700 723 0.83 13 15 0.18 1.5e+03 0.9 0.0 25 41 768 784 763 786 0.83 14 15 0.18 1.5e+03 0.9 0.0 25 41 831 847 826 849 0.83 15 15 0.18 1.5e+03 0.9 0.0 25 41 894 910 889 912 0.83
Sequence Information
- Coding Sequence
- ATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATGTGATATGGTACTCACCGAGTGGCCTCTTGATGTACTTGTGGTGTATGGCCTGCTCGACCTGCAGCAGCGCCCCGGCCAGCCCCCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATGTGATATGGTACTCACCGAGTGGCCTCTTGATGTACTTGTGGTGTATGGCCTGCTCGACCTGCAGCAGCGCCCCGGCCAGCCCCCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATGTGATATGGTACTCACCGAGTGGCCTCTTGATGTACTTGCGGTGTATGGCCTGCTCGACCTGCAGCAGCGCCCCGGCCAGCCCCCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATGTGATATGGTACTCACCGAGTGGCCTCTTGATGTACTTGTGGTGTATGGCCTGCTCGACCTGCAGCAGCGCCCCAGCCAGCCCCCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATGTGATATGGTACTCACCGAGTGGCCTCTTGATGTACTTGCGGTGTATGGCCTGCTCGACCTGCAGCAGCGCCCCGGCCAGCCCTCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATGTGATATGGTACTCACCGAGTGGCCTCTTGATGTACTTGTGGTGTATGGCCTGCTCGACCTGCAGCAGCGCCCCGGCCAGCCCCCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATGTGATATGGTACTCACCGAGTGGCCTCTTGATGTACTTGTGGTGTATGGCCTGCTCGACCTGCAGCAGCGCCCCGGCCAGCCCCCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATGTGATATGGTACTCACCGAGTGGCCTCTTGATGTACTTGTGGTGTATGGCCTGCTCGACCTGCAGCAGCGCCCCGGCCAGCCCCCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATGTGATATGGTACTCACCGAGTGGCCTCTTGATGTACTTGTGGTGTATGGCCTGCTCGACCTGCAGCAGCGCCCCGGCCAGCCCCCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATGTGATATGGTACTCACCGAGTGGCCTCTTGATGTACTTGCGGTGTATGGCCTGCTCGACCTGCAGCAGCGCCCCGGCCAGCCCCCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATGTGATATGGTACTCACCGAGTGGCCTCTTGATGTACTTGCGGTGTATGGCCTGCTCGACCTGCAGCAGCGCCCCGGCCAGCCCCCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATGTGATATGGTACTCACCGAGTGGCCTCTTGATGTACTTGTGGTGTATGGCCTGCTCGACCTGCAGCAGCGCCCCGGCCAGCCCCCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATGTGATATGGTACTCACCGAGTGGCCTCTTGATGTACTTGTGGTGTATGGCCTGCTCGACCTGCAGCAGCGCCCCGGCCAGCCCCCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATGTGATATGGTACTCACCGAGTGGCCTCTTGATGTACTTGTGGTGTATGGCCTGCTCGACCTGCAGCAGCGCCCCGGCCAGCCCCCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATGTGATATGGTACTCACCGAGTGGCCTCTTGATGTACTTGTGGTGTATGGCCTGCTCGACCTGCAGCAGCGCCCCGGCCAGCCCCCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGATCAGCGCCCCGGCCAGCCCCCGCACCGTGGCCTgcgtggcggcggcggccgcgccggGCTCCACCTTGATGCCGTTCGGGCGGGGCTCGAGGCAGTGGCCGGGGTCGCGGTACTTGTTCTCTGA
- Protein Sequence
- MPFGRGSRQWPGSRYLFSDVIWYSPSGLLMYLWCMACSTCSSAPASPRTVACVAAAAAPGSTLMPFGRGSRQWPGSRYLFSDVIWYSPSGLLMYLWCMACSTCSSAPASPRTVACVAAAAAPGSTLMPFGRGSRQWPGSRYLFSDVIWYSPSGLLMYLRCMACSTCSSAPASPRTVACVAAAAAPGSTLMPFGRGSRQWPGSRYLFSDVIWYSPSGLLMYLWCMACSTCSSAPASPRTVACVAAAAAPGSTLMPFGRGSRQWPGSRYLFSDVIWYSPSGLLMYLRCMACSTCSSAPASPRTVACVAAAAAPGSTLMPFGRGSRQWPGSRYLFSDVIWYSPSGLLMYLWCMACSTCSSAPASPRTVACVAAAAAPGSTLMPFGRGSRQWPGSRYLFSDVIWYSPSGLLMYLWCMACSTCSSAPASPRTVACVAAAAAPGSTLMPFGRGSRQWPGSRYLFSDVIWYSPSGLLMYLWCMACSTCSSAPASPRTVACVAAAAAPGSTLMPFGRGSRQWPGSRYLFSDVIWYSPSGLLMYLWCMACSTCSSAPASPRTVACVAAAAAPGSTLMPFGRGSRQWPGSRYLFSDVIWYSPSGLLMYLRCMACSTCSSAPASPRTVACVAAAAAPGSTLMPFGRGSRQWPGSRYLFSDVIWYSPSGLLMYLRCMACSTCSSAPASPRTVACVAAAAAPGSTLMPFGRGSRQWPGSRYLFSDVIWYSPSGLLMYLWCMACSTCSSAPASPRTVACVAAAAAPGSTLMPFGRGSRQWPGSRYLFSDVIWYSPSGLLMYLWCMACSTCSSAPASPRTVACVAAAAAPGSTLMPFGRGSRQWPGSRYLFSDVIWYSPSGLLMYLWCMACSTCSSAPASPRTVACVAAAAAPGSTLMPFGRGSRQWPGSRYLFSDVIWYSPSGLLMYLWCMACSTCSSAPASPRTVACVAAAAAPGSTLMPFGRGSRQWPGSRYLFSDQRPGQPPHRGLRGGGGRAGLHLDAVRAGLEAVAGVAVLVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -