Ebru006342.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977935.1:50917780-50918903[-]
Transcription Factor Domain
- TF Family
- HMGA
- Domain
- HMGA domain
- PFAM
- AnimalTFDB
- TF Group
- Unclassified Structure
- Description
- This entry represents the HMGA family, whose members contain DNA-binding domains, also known as AT hooks due to their ability to interact with the narrow minor groove of AT-rich DNA sequences. They play an important role in chromatin organisation [1]. The high mobility group (HMG) proteins are the most abundant and ubiquitous nonhistone chromosomal proteins. They bind to DNA and to nucleosomes and are involved in the regulation of DNA-dependent processes such as transcription, replication, recombination, and DNA repair. They can be grouped into three families: HMGB (HMG 1/2), HMGN (HMG 14/17) and HMGA (HMG I/Y). The characteristic domains are: AT-hook for the HMGA family, the HMG Box for the HMGB family, and the nucleosome-binding domain (NBD) for the members of the HMGN family [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00053 20 7.0 0.2 10 18 27 35 25 39 0.85 2 15 0.00062 23 6.7 0.4 10 18 47 55 46 59 0.84 3 15 0.00062 23 6.7 0.4 10 18 67 75 66 79 0.84 4 15 0.0012 44 5.8 0.8 10 18 87 95 86 98 0.89 5 15 0.00062 23 6.7 0.4 10 18 107 115 106 119 0.84 6 15 0.00079 30 6.4 0.2 10 18 127 135 126 138 0.90 7 15 0.00062 23 6.7 0.4 10 18 147 155 146 159 0.84 8 15 0.00062 23 6.7 0.4 10 18 167 175 166 179 0.84 9 15 0.00062 23 6.7 0.4 10 18 187 195 186 199 0.84 10 15 0.00062 23 6.7 0.4 10 18 207 215 206 219 0.84 11 15 0.00062 23 6.7 0.4 10 18 227 235 226 239 0.84 12 15 0.00079 30 6.4 0.2 10 18 247 255 246 258 0.90 13 15 0.00079 30 6.4 0.2 10 18 267 275 266 278 0.90 14 15 0.00062 23 6.7 0.4 10 18 287 295 286 299 0.84 15 15 0.00055 21 6.9 0.2 10 18 307 315 306 318 0.85
Sequence Information
- Coding Sequence
- ATGACGATGTTACTGTCGTCGCATACGATTGGCAGGGTCGACGGCTTTACGGTGCCAACAGTATTGTCGACGGCACTACGGTGTCGTGGACGGCCCAACGGCAGCGTCGACAAGCCAACAGTATTGTCGACGGCACTACGGTGTCGTGGACGGCCCAACGGCAGCGTCGACAAGCCAACAGTATTGTCGACGGCACTACGGTGTCGTGGACGGCCCAACGGCAGCGTCGACAAGCCAACAGTATTGTCGACGGCACTACGGTGTCGAGGACGGCCCAACGGCAGCGTCGGTAAGCCAACAGTATTGTCGACGGCACTACGGTGTCGTGGACGGCCCAACGGCAGCGTCGACAAGCCAACAGTATTGTCGACGGCACTACGGTGTCGTGGACGGCCCAACGGCAGCGTCTACAAGCCAACAGTATTGTCGACGGCACTACGGTGTCGTGGACGGCCCAACGGCAGCGTCGACAAGCCAACAGTATTGTCGACGGCACTACGGTGTCGTGGACGGCCCAACGGCAGCGTCGACAAGCCAACAGTATTGTCGACGGCACTACGGTGTCGTGGACGGCCCAACGGCAGCGTCGACAAGCCAACAGTATTGTCGACGGCACTACGGTGTCGTGGACGGCCCAACGGTAGCGTCGACAAGCCAACGGTATTGTCGACGGCACTACGGTGTCGTGGACGGCCCAACGGCAGCGTCGACAAGCCAACAGTATTGTCGACGGCACTACGGTGTCGTGGACGGCCCAACGGCAGCGTCTACAAGCCAACAGTATTGTCGACGGCACTACGGTGTCGTGGACGGCCCAACGGCAGCGTCTACAAGCCAACAGTATTGTCGACGGCACTACGGTGTCGTGGACGGCCCAACGGCAGCGTCGACAAGCCAACAGTATTGTCGACGGCACTACGGTGTCGTGGACGGCCCAACGGTAGCGTCGACAAGCCAACGGTATTGTCGACGGCACTGCGGTGTCTCAAAGGTACAACGGTGCCGTTTGGCTGCGACCTACGAACGTAG
- Protein Sequence
- MTMLLSSHTIGRVDGFTVPTVLSTALRCRGRPNGSVDKPTVLSTALRCRGRPNGSVDKPTVLSTALRCRGRPNGSVDKPTVLSTALRCRGRPNGSVGKPTVLSTALRCRGRPNGSVDKPTVLSTALRCRGRPNGSVYKPTVLSTALRCRGRPNGSVDKPTVLSTALRCRGRPNGSVDKPTVLSTALRCRGRPNGSVDKPTVLSTALRCRGRPNGSVDKPTVLSTALRCRGRPNGSVDKPTVLSTALRCRGRPNGSVYKPTVLSTALRCRGRPNGSVYKPTVLSTALRCRGRPNGSVDKPTVLSTALRCRGRPNGSVDKPTVLSTALRCLKGTTVPFGCDLRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -