Ebru022661.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977940.1:28506699-28515250[+]
Transcription Factor Domain
- TF Family
- HMG
- Domain
- HMG_box domain
- PFAM
- PF00505
- TF Group
- Other Alpha-Helix Group
- Description
- High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.2e-05 0.079 15.4 2.7 36 64 2 30 1 31 0.95 2 22 5.4e-06 0.01 18.2 2.5 34 64 30 60 28 61 0.94 3 22 6.2e-06 0.012 18.1 2.4 34 64 60 90 59 91 0.95 4 22 5.2e-06 0.0098 18.3 2.4 34 64 90 120 88 121 0.94 5 22 5.6e-06 0.01 18.2 2.5 34 64 120 150 118 151 0.94 6 22 5.2e-06 0.0097 18.3 2.4 34 64 150 180 148 181 0.94 7 22 5.6e-06 0.01 18.2 2.5 34 64 180 210 178 211 0.94 8 22 5e-06 0.0094 18.3 2.4 34 64 210 240 208 241 0.94 9 22 5.5e-06 0.01 18.2 2.5 34 64 240 270 238 271 0.94 10 22 5.7e-06 0.011 18.2 2.6 34 64 270 300 268 301 0.94 11 22 5.4e-06 0.01 18.2 2.5 34 64 300 330 298 331 0.94 12 22 5.3e-06 0.01 18.3 2.5 34 64 330 360 328 361 0.94 13 22 5.2e-06 0.0098 18.3 2.4 34 64 360 390 358 391 0.94 14 22 5.7e-06 0.011 18.2 2.5 34 64 390 420 388 421 0.94 15 22 5.5e-06 0.01 18.2 2.5 34 64 420 450 418 451 0.94 16 22 5.7e-06 0.011 18.2 2.6 34 64 450 480 448 481 0.94 17 22 5.2e-06 0.0097 18.3 2.4 34 64 480 510 478 511 0.94 18 22 5.4e-06 0.01 18.3 2.5 34 64 510 540 508 541 0.94 19 22 5.4e-06 0.01 18.3 2.5 34 64 540 570 538 571 0.94 20 22 5.3e-06 0.01 18.3 2.5 34 64 570 600 568 601 0.94 21 22 5.5e-06 0.01 18.2 2.5 34 64 600 630 598 631 0.94 22 22 1.4e-07 0.00026 23.3 4.6 34 69 630 665 628 665 0.96
Sequence Information
- Coding Sequence
- ATGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTCTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTCTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTGTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTGTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTGTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTGTCCGAGCAGGACAAGGCGAGATATGACAGGGAACTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTCTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTGTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTCTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTGTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTGTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTCTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTGTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTGTCCGAGCAGGACAAGGCGAGATATGACAGGGAACTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTCTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTGTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTCTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTGTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTGTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTCTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTCTCCGAGCAGGACAAGGCGAGATATGACAGGGAGCTGGGCCGGCGCTGGGCCGCCGCAGAGCCCGAGGCCAAGTCCAAGTACGAGGCGCTGTCCGAGCAGGACAAGGCGAGATATGACAGGGAGATGACGGCGTACAAAAAGGGGCCTTTAGCTGTAGTCCAGCCGCCTCCGCTGCCGGAGGTGGAGGAGGTGCCGGACTTCGAGGCGGACGAGGAGTACAAGTGA
- Protein Sequence
- MGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDRELGRRWAAAEPEAKSKYEALSEQDKARYDREMTAYKKGPLAVVQPPPLPEVEEVPDFEADEEYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -