Ebru032348.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977944.1:20925098-20971729[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.3e-06 0.099 15.3 0.0 2 51 154 207 153 218 0.86 2 3 5e-05 0.94 12.1 0.0 23 53 312 343 301 351 0.86 3 3 6e-07 0.011 18.3 0.0 23 57 403 438 391 462 0.74
Sequence Information
- Coding Sequence
- ATGGTGCTGGTGTGCACGCTGGAGTGCGTGTACGCGCTCACGTCGCTCGGGGACCGCGCGGGCGAGTGCGCGGCGCGCGCCGGCGTCGTGCCCACGCTCGTGTCGCTCGTCACTGTGGAGTGCGTGTACGCGCTCACGTCGCTCGGGGACCGCGCGGGCGAGTGCGCGGCGCGCGCCGGCGTCGTGCCCACGCTCGTGTCGCTCGTCACTGTGGAGGCACAGAGCTACGGGCCCCGCGCTTGCATCCTGATGCGCGTGGTGGAGACGGTGAGCGGCCCGAGCGCGGTGGCCGCCGCCGAGCAGGAGAGACAGACTCAGCCGCCACAACAACAGGCAGTGTCCATGCCGTCTACTCCGACGAAGGCGGAGGTGCCTCGGCCGCAGTCGCCGCAGCCGGCCGCGCCGCCCAACAGCATACAACACTCGCATATGCAGCAACGGACTGTGCAGGAAAACGAACACTTCGCGCAAGCCTGGCTCCGGAACACATACGAAGCGCTTCCTGTCGGCGACAACAGTACCTGCGACGCGCCCGAGCTGTACCGGCAGTACCTCGCCTGCTGCGCGAAGCTCAACAGGAAAGGGCTCATCGCACCCGCCAACCTGTCCCGACTTGTCAGCGCTTCCTGTCGGCGACAACAGTACCTGCGACGCACCCGAGCTGTACCGGCAGTACCTCGCCTGCTGCGCGAAGCTCAACAGGAAAGGGCTCATCGCACCCGCCAACCTGTCCCGACTTGTCAGGTAAAGCAACTGCAGCGCTTCCTGTCGGCGACAACAGTACCTGCGACGCACCCGAGCTGTACCGGCAGTACCTCGCCTGCTGCGCGAAGCTCAACAGGAAAGGGCTCATCGCACCCGCCAACCTGTCCCGACTTGTCAGGTAAAGCAACTGCAGCGCTTCCTGTCGGCGACAACAGTACCTGCGACGCACCCGAGCTGTACCGGCAGTACCTCGCCTGCTGCGCGAAGCTCAACAGGAAAGGGCTCATCGCACCCGCCAACCTGTCCCGACTTGTAAAGCAACTGCAGCGCTTCCTGTCGGCGACAACAGTACCTGCGACGCACCCGAGCTGTACCGGCAGTACCTCGCCTGCTGCGCGAAGCTCAACAGGAAAGGGCTCATCGCACCCGCCAACCTGTCCCGACTTGTCAGGTAAAGCAACTACAGCGCTTCCTGTCGGCGACAACAGTACCTGCGACGCACCCGAGCTGTACCGGCAGTACCTCGCCTGCTGCGCGAAGCTCAACAGGAAAGGGCTCATCGCACCCGCCAACCTGTCCCGACTTGTCAGAACCGTTTTTGGTGGGACCGTAGGGCCTAACACTATCTCCCTGCCAACGGGTGAAACCCAGCAGGTCTACATCGGCATTCGGTCCAAGAACCCGCAGAACAGAACCAATCCACCAGCAGGCCCAGCGTCGCCCATACTGAAAGCGCAGCTGACGAATAAAACGGCGACAGTTGAAGTCAAGACTGTTGTATCGCAACCACAGCCGCAGCCCCAGCCCCAGCCGTCCCACCCTCACATCTCGCACGCGCTGGAACCGAACGCGACCAACACAACCCTTATAAAGCACCTGCTCGCCAATAAAGTAAGCCCCGCCCTACAAACACAGCCGCAAGCGATGGATGTGGACCCGGAGTCTTTGATAAAGTGCACGACTATAACCTCGGGCGGGGTAGCCAGCAGCACACATACTATACAAGGAGAGAAGAAGTCAGCGCAAAACAAAATGCTGGCGGATCTCCTCGAAAAGAAATCCAACCCGCCAGTCCAAGTCGTCCAAATGGGCCCCCACATGAACGCCCCGACCATACAGATCACAGAGACCGGCCAAATAGTCCAAGTCAAGCCGGACAACTCTGTCATACAGTACAACGATGGCATCGTCTCCCAAGGCAGCCAATACTTCCAAATCAAGAACGAACACGGACAACTTATCCAAATAAAGAATGAACAGGGACAGATTATCCAGCTAAAAACCGACCAACTTCAAAATCCGTTGTTACAGTTTAAGAATGACCAAGGCCAGGTGCTACAGACGAATCCGATTATTCAGAGCGTGATACAGAATCAGATTAAAGAGGAGAACGAGCAGTATTATGAACCGGCTAGTAAGAGAGTGAAGGTTGAATCGAAAGCAGAGAATCCGCCCCAGGAAAGCGTATCGAAGACTGCAGCCAATTTGTACGCGGCGTTGGCGGCCTCCGCCTTAGAAGATGAAGACGATTTGGTGCCGGTAAAACAGGAACCAATCGATGTGAACCAGCAATCCGTCATGGTCGGCGGGAGTGATGGCTCGTCTGTTATCATTCAGGAACCCATTTTACAGATGCAGCAACAAACGTTGCAGGTCCAGCAGCCAATGCTGCAAGTGCAACCGATGGACGTCCAGAACATTCTAACTTCGCAAGCCGGACAGCTGATACTGCAAGgTCTTAGTTATATCACCCAAAATATGCCTGGAAATATGATGCAAAAGACAATTATTATAGTTCAGGGGCCGACCGGTGGCGGACCCCTGACATTGACGAACGCGCCACAACTGACGGCAAGTCAGCAACCGATAATAACCTCGCAACCGCAACCACATAAAGCTCAAATCGTCAACCAACCACTAGTGGTTACCCAGAAACAGCCGCCAGCACTTATCAGCACGTCATCGAGCAACCAGATAGTGGGTAGCCCCCAGATTATACAGGGCAACCAGCAGATTATACAGGGCAACCAGCAAATTATACAGGGCAACCAACAGATAATGCAGGGCAACCAGCAGATTATAGCGATGTCTAGTAACCAGCAGATTATAATGAACGCGCCGATGAAGCAGGGGGTACACAGGGTAGTGCAGCAACCGCAGCGGCAGCAGGTTGCCAGTGTTAGCGGCAACCAGCAAGTGCAGGATGATAAGTCCAGTGTGATTAAGACTTCTGTGGTAACGGTGAGTTTAGTTTAA
- Protein Sequence
- MVLVCTLECVYALTSLGDRAGECAARAGVVPTLVSLVTVECVYALTSLGDRAGECAARAGVVPTLVSLVTVEAQSYGPRACILMRVVETVSGPSAVAAAEQERQTQPPQQQAVSMPSTPTKAEVPRPQSPQPAAPPNSIQHSHMQQRTVQENEHFAQAWLRNTYEALPVGDNSTCDAPELYRQYLACCAKLNRKGLIAPANLSRLVSASCRRQQYLRRTRAVPAVPRLLREAQQERAHRTRQPVPTCQVKQLQRFLSATTVPATHPSCTGSTSPAARSSTGKGSSHPPTCPDLSGKATAALPVGDNSTCDAPELYRQYLACCAKLNRKGLIAPANLSRLVKQLQRFLSATTVPATHPSCTGSTSPAARSSTGKGSSHPPTCPDLSGKATTALPVGDNSTCDAPELYRQYLACCAKLNRKGLIAPANLSRLVRTVFGGTVGPNTISLPTGETQQVYIGIRSKNPQNRTNPPAGPASPILKAQLTNKTATVEVKTVVSQPQPQPQPQPSHPHISHALEPNATNTTLIKHLLANKVSPALQTQPQAMDVDPESLIKCTTITSGGVASSTHTIQGEKKSAQNKMLADLLEKKSNPPVQVVQMGPHMNAPTIQITETGQIVQVKPDNSVIQYNDGIVSQGSQYFQIKNEHGQLIQIKNEQGQIIQLKTDQLQNPLLQFKNDQGQVLQTNPIIQSVIQNQIKEENEQYYEPASKRVKVESKAENPPQESVSKTAANLYAALAASALEDEDDLVPVKQEPIDVNQQSVMVGGSDGSSVIIQEPILQMQQQTLQVQQPMLQVQPMDVQNILTSQAGQLILQGLSYITQNMPGNMMQKTIIIVQGPTGGGPLTLTNAPQLTASQQPIITSQPQPHKAQIVNQPLVVTQKQPPALISTSSSNQIVGSPQIIQGNQQIIQGNQQIIQGNQQIMQGNQQIIAMSSNQQIIMNAPMKQGVHRVVQQPQRQQVASVSGNQQVQDDKSSVIKTSVVTVSLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -