Ebil032980.1
Basic Information
- Insect
- Epinotia bilunana
- Gene Symbol
- -
- Assembly
- GCA_947049265.1
- Location
- CAMRIQ010000470.1:205097-210616[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00026 2.6 9.4 0.5 5 45 184 224 181 231 0.87 2 7 0.0016 16 6.8 0.0 20 44 227 251 220 255 0.81 3 7 0.012 1.2e+02 4.0 0.1 22 48 257 282 254 287 0.83 4 7 0.0056 56 5.1 0.1 23 46 286 309 280 316 0.82 5 7 0.21 2.1e+03 0.0 0.0 21 47 312 338 308 345 0.81 6 7 0.0011 11 7.4 0.0 21 48 368 395 357 400 0.84 7 7 0.37 3.7e+03 -0.7 0.0 21 43 396 418 392 423 0.76
Sequence Information
- Coding Sequence
- ATGGAGGTGCCGGGAGCAGGGAGGGTGAAGGCGGAGCCCGCGTGGGGGGACGAGGACGACCGTGGGCCGGAGCGAGCCCGACATGGGCATGTTGCGGTGTCGGAGTGTCTGCAGGCTGGGGCTGTGTATGTGAAGCAAGAGGCTGTGAAGGTAAACCAGGAGCCTCTGGAAGAAGTCCTGACAAACAACTGGTCTCCGCCCCAAGCATTGCCACACAACCTGGTGTTTACGGGGCATATGTGCGTCACGGTGAAGGCGGAGTTCGAGCCGAAGGGGGGGGTTGGGGAGGGGGAGGGCCGGAGAGAGACAGCAGGCGCGTGCGGGAGCGAGACGGCGTGCTCGGCGGAACAAGACCTGCGGGGGCTAGCGGAGGCAACCAAGCGTCCAGAGTTCGTAGCGGTGCGAGTGAAGGTCGAGGCTGTAGAAGAAAAGGCTGTGGGCATTGAACAGTCTGGGGACATGGAACTGCCTGTGGACGTGAAACAGGCTGTGAGCATGAAGCGCGAGCTGTACGCGGGGCTCGCGCGGGGGCGCGGcggggcgccggcgcgcgccgcgctcccGGACCCACAAGAGTCGTGTGTGTCGGCGCGTCAGGACAGAGAGCCTCACACGTGTGGCGTGTGCACGAAGACATTCAAATCGTCGAGCATATTAAAGGAACACATGCGGAGCCACACGGGAGAAAAACCCTTCCACTGCGAAATGTGCGACAAACGGTTCACAACGTCGGGCAACTTAAAGAGACACGAACATATACACACTGGTGAAAAATCATACTCCTGTGGAGTATGTTCAAAGCTGTTCAGACATTCCAATGCTCTCAAGGACCATGAACGTCGTCACACAGGAGTAAAACCGTATTCCTGTAAAGTATGTAACAAGGCGTTCACAGAATCGGGTAACTTGAAGAAACACGAACGGGTACACACTGGGGAGAAACCGTACTCGTGTGAGACGTGTAAGAAAGAGTTTAAGGACTGGGGCAATTTGAAGAGCCATGAGCGAATTCACACTGGAATAAAACCCTATTCCTGCGAAGTTTGTAAGAAGGAGTTTACCGGGCTGGGTAATTTTAAGAGGCACGAACGTATTCATACTGGTGAAAAACCATACTCGTGTAAAATATGTGGACAAAAGTTCACGCAGTCGAACAGCTTAAAGGAGCACACGCGGATTCATACTGGAGAAAAACCTTTCTCTTGCAGTATGTGTAATAAAGAGTTTTCGGCATTGGGGACTTTAAAGAGACATGAACGCATTCACGCCTGGATCCCAAGCAGCGTTTCACATGATGACTGCGAAGGGTTGAGGACTGCCACGTGGACAGTCGTAGCTAATTCTCCCGCGTGA
- Protein Sequence
- MEVPGAGRVKAEPAWGDEDDRGPERARHGHVAVSECLQAGAVYVKQEAVKVNQEPLEEVLTNNWSPPQALPHNLVFTGHMCVTVKAEFEPKGGVGEGEGRRETAGACGSETACSAEQDLRGLAEATKRPEFVAVRVKVEAVEEKAVGIEQSGDMELPVDVKQAVSMKRELYAGLARGRGGAPARAALPDPQESCVSARQDREPHTCGVCTKTFKSSSILKEHMRSHTGEKPFHCEMCDKRFTTSGNLKRHEHIHTGEKSYSCGVCSKLFRHSNALKDHERRHTGVKPYSCKVCNKAFTESGNLKKHERVHTGEKPYSCETCKKEFKDWGNLKSHERIHTGIKPYSCEVCKKEFTGLGNFKRHERIHTGEKPYSCKICGQKFTQSNSLKEHTRIHTGEKPFSCSMCNKEFSALGTLKRHERIHAWIPSSVSHDDCEGLRTATWTVVANSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00656390;
- 90% Identity
- iTF_00656390;
- 80% Identity
- iTF_00656390;