Esuc009360.1
Basic Information
- Insect
- Epicampocera succincta
- Gene Symbol
- -
- Assembly
- GCA_932527255.1
- Location
- CAKOBP010000035.1:3327692-3329040[-]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.16 7.6e+02 0.1 0.0 5 24 24 43 20 51 0.82 2 13 0.34 1.6e+03 -1.0 0.0 5 22 43 60 39 62 0.82 3 13 0.0094 45 4.0 0.0 5 25 62 82 57 92 0.81 4 13 0.0094 46 4.0 0.0 5 25 105 125 100 135 0.81 5 13 0.51 2.5e+03 -1.6 0.0 7 24 131 148 130 159 0.76 6 13 0.56 2.7e+03 -1.7 0.0 7 24 155 172 154 181 0.77 7 13 0.51 2.5e+03 -1.6 0.0 7 24 179 196 178 207 0.76 8 13 0.71 3.5e+03 -2.1 0.0 7 24 203 220 202 225 0.78 9 13 0.11 5.4e+02 0.5 0.0 5 25 220 240 215 250 0.79 10 13 0.0079 38 4.2 0.0 5 25 263 283 258 337 0.88 11 13 0.51 2.5e+03 -1.6 0.0 7 24 337 354 336 365 0.76 12 13 0.3 1.4e+03 -0.8 0.0 10 24 364 378 359 404 0.59 13 13 0.017 83 3.1 0.0 5 23 402 420 397 423 0.83
Sequence Information
- Coding Sequence
- ATGCTGTTAAATGAAATGCTGTTAAATGAAAGATTTATAGAATATTTTAGATTAAATGAAGAAGGCCTTTTGATGCTGTTAAATGAAAGATTTATAGAATATTTTAGATTAAATGAAGAAGGCCTTTTGATGCTGTTAAATGAAAGATTTATAGAATATTTTAGATTAAATGAAGAAGGCCTTTTGATGCTGTTAAGTGAAAGATTTATAGAATATTTTAGACTAAATGAAGAAGGCCTTTTGATGCTGGTAAATGAAATGCTGTTAAATGAAAGATTTATAGAATATTTTAGACTAAATGAAGAAGGCCTTTTGATGCTGTTAAGTGAAAGATTTATAGAATATTTTAGACTAAATGAAGAAGGCCTTTTGATGCTGGTAAATGAAATGCTGTTAAATGAAAGATTTATAGAATATTTTAGATTAAATGAAGAAGGCCTTTTGATGCTGTTAAATGAAATGCTGTTAAATGAAAGATTTATAGAATATTTTAGATTAAATGAAGAAGGCCTTTTGATGCTGTTAAATGAAATGCTGTTAAATGAAAGATTTATAGAATATTTTAGATTAAATGAAGAAGGCCTTTTGATGCTGTTAAATGAAATGCTGTTAAATGAAAGATTTATAGAATATTTTAGACTAAATGAAGAAGGCCTTTTGATGCTGTTAAATGAAAGATTTATAGAATATTTTAGACTAAATGAAGAAGGCCTTTTGATGCTGGTAAATGAAATGCTGTTAAATGAAAGATTTATAGAATATTTTAGACTAAATGAAGAAGGCCTTTTGATGCTGTTAAGTGAAAGATTTATAGAATATTTTAGACTAAATGAAGAAGGCCTTTTGATGCTGGTAAATGAAATGCTGTTAAATGAAAGATTTATAGAATATTTTAGATTAAATGAAGAAGGCCTTTTGATGCTGTTAAATGAAATGCTGTTAAATGAAAGATTTATAGAATATTTTAGATTAAATGAAGAAGGCCTTTTGATGCTGTTAAATGAAATGCTGTTAAATGAAAGATTTATAGAATATTTTAGACTAAATGAAGAAGGCCTTTTGATGCTGTTAAATGAAATGCTGTTAAATGAAAGATTTATAGAATATTTTAGATTAAATGAAGAAGGCCTTTTGATGCTGTTAAATGAAATGCTGTTAAATGAAAGATTTATAGAATATTTTAGACTAAATGAAGAAGGCCTTTTGATGCTGTTAAGTGAAAGATTTATAGAATATTTTAGACTAAATGAAGAAGGCCTTTTGATGCTGTGA
- Protein Sequence
- MLLNEMLLNERFIEYFRLNEEGLLMLLNERFIEYFRLNEEGLLMLLNERFIEYFRLNEEGLLMLLSERFIEYFRLNEEGLLMLVNEMLLNERFIEYFRLNEEGLLMLLSERFIEYFRLNEEGLLMLVNEMLLNERFIEYFRLNEEGLLMLLNEMLLNERFIEYFRLNEEGLLMLLNEMLLNERFIEYFRLNEEGLLMLLNEMLLNERFIEYFRLNEEGLLMLLNERFIEYFRLNEEGLLMLVNEMLLNERFIEYFRLNEEGLLMLLSERFIEYFRLNEEGLLMLVNEMLLNERFIEYFRLNEEGLLMLLNEMLLNERFIEYFRLNEEGLLMLLNEMLLNERFIEYFRLNEEGLLMLLNEMLLNERFIEYFRLNEEGLLMLLNEMLLNERFIEYFRLNEEGLLMLLSERFIEYFRLNEEGLLML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -