Efoe035767.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747119.1:66760-71453[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.012 1.3e+02 4.0 0.4 21 46 181 206 176 212 0.84 2 8 0.15 1.6e+03 0.5 0.1 21 43 209 231 205 237 0.82 3 8 4.4e-05 0.47 11.8 0.2 20 44 236 260 228 265 0.88 4 8 0.085 9e+02 1.3 0.1 21 35 323 337 316 347 0.76 5 8 8.7e-05 0.93 10.9 0.0 21 46 351 376 342 382 0.89 6 8 0.1 1.1e+03 1.0 0.1 21 43 407 429 403 435 0.80 7 8 0.00023 2.5 9.5 0.0 21 45 435 459 429 468 0.84 8 8 0.26 2.8e+03 -0.2 0.0 21 33 463 475 460 489 0.75
Sequence Information
- Coding Sequence
- ATGTCGCTGGGAGCGGCGCGCGTCAAGGAGGAGCCCGGGCGGGCGGCCGCGGTCCGCGGTACTGTGTGGGTTAAGTTGGAGCCGTTGTGTGCGGAGGAGCCCGGACAGGTGCCTCCGGTCCCGGTGAATGTGAAGCAGGAGCCGCTACAGGAGCCCATACATCGACAGCCGGTTAGTGTGAAGCGCGAGCCGGCGTGGCCGccccccgcgcccgcgcgcgcgccgtcGCCGCCCCCCGCGCCGGAGCTGCCTTGGCGCGGCTCGCGCGAGGTGCACGCGGGGGCGGACTTCCGCTACGAGATCACGCTGGAGCCCGAGTGCGTGCTGCAGCCCTACACAAGTGATTCGCCCCGCGTCGCAAGCCCCACCCCGCTCGCGAGCGCTGCGCAGCCGCGCCTCCCCACACACACCGACACGCGAAATTACGTGTGCGACGGTTGCGGCGAAACgtttatacaaaaatatcacTTAATCTGCCACTTTAAGGGCTGTCTGCAGAAGCCTATAGTTGTACAGAAAAACCTTGACTGCAATGAGCCGAGCAGGAAGCCCTACGCCTGCGAAATTTGTCAGAAGAAGTTTTCGATCCGGCGCGACCTAACACGGCACGAGCGCATCCACACGGGGGAGAAACCCTTCTCATGCGAGGTGTGCCACAAGAAGTTCACGCAGCTGGGCGCGCTCACGCAGCACCGGCGTATACACACGGGTGAGAAACCACACACCTGCGAGATATGTCACAAAGAGTTTGCGCAGTCGGGCAGCTTGAACAGACACAGGCAAACACACGTGGACGCGGGAGCATCCGCGTACCCCTGCGAGTTGTGTAACATGGAGTTTGCACATAAGAATCATTTGAAGATACACATACGAAACCATACCGGCGCGAAGTTGTACTCCTGCGAAATGTGCACGAAGGAGTTCGCAGTTCTGCACGACTTGCTGCGACATCAGCGGACTCACACGGGCGAGAAACCGTTTTCTTGCAACATATGCCACAAGGAGTTCACGCAGCTGGCCCACGTCAACAACCATAAGCGGACACATACCGGCGAGAAACCCTACACTTGCGATCTATGCAACAAGGGGTTCACGAACATAAGCAATTTAAAAAGGCATTTGGACGTGCACGCGGGGACGAGGTCCTTCATCTGCGAGATATGTAACAAGGCGTTTACGCTGAAAACGCACCTGATGGCGCACATACGGATCCACACGGGCGAAAAGCCTTACTCCTGCAAGATTTGTAACAAAGAGTTCTCGCGCTCGGGCTACCTGAAGATCCACCAGCGCGTTCACACCGGGGAGAAACCACACACCTGCGAAATATGTAAAGGACAGTTTGCGTCGCTGCGTAATTTGAAAGAGCACAAGTTAATTCACACGGGGGAAAAGCCACACATGTGCGGGATATGTAATAAGAAGTTTACCCATGCGGGGAGTCTTAACAACCACAAACGAATACACAACCGGGAGAACCAGGTGCCCGATGATTCTTCGACAGATGATTAG
- Protein Sequence
- MSLGAARVKEEPGRAAAVRGTVWVKLEPLCAEEPGQVPPVPVNVKQEPLQEPIHRQPVSVKREPAWPPPAPARAPSPPPAPELPWRGSREVHAGADFRYEITLEPECVLQPYTSDSPRVASPTPLASAAQPRLPTHTDTRNYVCDGCGETFIQKYHLICHFKGCLQKPIVVQKNLDCNEPSRKPYACEICQKKFSIRRDLTRHERIHTGEKPFSCEVCHKKFTQLGALTQHRRIHTGEKPHTCEICHKEFAQSGSLNRHRQTHVDAGASAYPCELCNMEFAHKNHLKIHIRNHTGAKLYSCEMCTKEFAVLHDLLRHQRTHTGEKPFSCNICHKEFTQLAHVNNHKRTHTGEKPYTCDLCNKGFTNISNLKRHLDVHAGTRSFICEICNKAFTLKTHLMAHIRIHTGEKPYSCKICNKEFSRSGYLKIHQRVHTGEKPHTCEICKGQFASLRNLKEHKLIHTGEKPHMCGICNKKFTHAGSLNNHKRIHNRENQVPDDSSTDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00654513;
- 90% Identity
- iTF_00654513;
- 80% Identity
- iTF_00654513;