Efoe001345.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747095.1:22705364-22720289[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.002 0.16 13.7 0.4 1 21 199 219 199 220 0.95 2 28 0.00034 0.027 16.1 0.3 2 22 255 275 254 275 0.93 3 28 0.00041 0.033 15.9 0.4 2 23 308 330 307 330 0.96 4 28 0.00014 0.011 17.3 0.3 1 23 381 404 381 404 0.95 5 28 6.6 5.2e+02 2.6 0.6 1 23 426 448 426 448 0.95 6 28 0.0031 0.25 13.1 5.1 2 23 482 503 481 503 0.96 7 28 0.0023 0.18 13.5 3.7 2 23 557 579 557 579 0.97 8 28 0.0013 0.1 14.3 1.1 1 23 629 652 629 652 0.97 9 28 0.0021 0.17 13.6 0.2 1 23 708 730 708 730 0.97 10 28 0.024 1.9 10.3 6.1 2 23 742 763 741 763 0.96 11 28 0.059 4.7 9.1 1.8 2 23 775 796 774 796 0.96 12 28 0.0054 0.43 12.3 1.0 1 23 806 828 806 828 0.98 13 28 0.012 0.98 11.2 7.2 1 23 856 878 856 878 0.97 14 28 0.018 1.4 10.7 4.3 1 23 889 911 889 911 0.98 15 28 1.7e-05 0.0014 20.2 0.8 1 23 919 941 919 941 0.97 16 28 0.00092 0.073 14.7 0.1 2 23 961 983 960 983 0.97 17 28 0.02 1.6 10.5 2.4 1 23 1001 1023 1001 1023 0.96 18 28 0.34 27 6.7 3.7 1 23 1030 1052 1030 1052 0.96 19 28 0.042 3.3 9.5 1.1 2 23 1063 1085 1062 1085 0.95 20 28 0.0051 0.41 12.4 0.3 1 23 1107 1129 1107 1129 0.97 21 28 5.9 4.7e+02 2.8 3.9 2 23 1172 1194 1171 1194 0.94 22 28 0.032 2.6 9.9 0.1 2 23 1210 1231 1209 1231 0.92 23 28 2.2 1.8e+02 4.1 4.5 5 23 1241 1259 1238 1259 0.94 24 28 0.023 1.8 10.4 0.8 2 23 1270 1292 1269 1292 0.95 25 28 0.54 43 6.0 2.8 2 23 1309 1327 1309 1327 0.89 26 28 0.041 3.3 9.5 1.4 2 21 1331 1350 1331 1351 0.94 27 28 1.7 1.4e+02 4.4 2.6 2 23 1399 1420 1398 1420 0.93 28 28 0.0012 0.099 14.3 0.3 2 23 1431 1453 1430 1453 0.95
Sequence Information
- Coding Sequence
- ATGGCTCTCAAGCTGGGAAAATGTAGACTCTGTCTCAAACTTGGCGACTTCTATTCCATTTTCACTGTGGATAACAGTGTACAATTGGCGGACATGGTGATGGAGTGCGCCCGGATCAAAATATTTGAAGGAGATGGACTTCCTGACAAAGTATGTGCCGAATGCATCCAGAAACTCAGTAGcgcatatatttttaaacaacaatGTGAAAGAGCGGATCAGGAGTTACGGCGGAATTATGTACCACCTCCAGGGTCGAGCTCCACCCCGGTCCCGCCGAACAGGACCAGTAGTGATTCCGTGTCGTCCACCCATACCGAGGCTACCAACCAAACCAAACCGTCTCAGGCTTCCGAGGTGGACTCCGCCAAAAGAAACAGTCGCAAGCGTAGTCACGAAAGCCTGGAAATTGCTTCTGCCAGCAGCAAATCAAACGAATTCCGGCCCACTACTTCAAAACGAATTGAGGAACTGAAAAGTAGTCACAAGAAGCCTAGGCTTAGCAATTATTATATGGATTCAGATTACGAAGATAATAGCGCTTCTCAAGTCTCTGCTGAAACTGATTCTGATGAACCCTTGCTGAGAGATGAATTCAAGTGTAAAGTTTGCGGACGGCAGTTCCCGTCGGCGAAGAGCTTAGGGGCGCACTTCCGATTTTGTGGCAAAACAAACAAAGCGAAAGAGACCCTCACTGAAAATGTACTTGTAACTATTCCAAAGAAAAATGTGCAGGACGCAACTGACATAGAAGACAAAATTAGCTGCGAGTTATGCGGCAAAAGTTTCAAATTGAAAATAATGCTGAAGCGTCACCAGGAAACTTGCGGCAAGTCTCCACAAAAGACATCCCCCAAACCCCTCGAAAAGGAGTTACTCATATCGCTGGAGCCTATAGACGGTATTCATGccaatagaataaaatgtacTATGTGCATCACTACGTTCAAAACCGTCGAGAATCTGGAAAAGCATATGAGAGTGGTCCACGCGGCTGTGCTTCCGAAAGTTAAAACAGAGCCGAAAGCGAACAACGGCAAAGTCTCTGTTCCCTGTATTTACTGCAAAAAACCTTTTGATGACTATTATGTTCACAGTGAACATTTCAGTAAATGTCCTGAAAGTACTAACGCGAGCACATTCCCGTGCCCAGTTTGCAAGAAAGTGACCACGCGGAAGGCCGCATACTTCCGTCACATCAAGGACGTGCACTTCGAGCCGCGCATGTGGATGCTGAAGCCGGAGGCGCCGGAGCAGGGCTCGGCGGCGGAGCGGTTCGAGTGCCGCATGTGCTGCAAGCGGCTGCCCACGGAGCAGCTGCTCATCACGCACTTGGCCGCGCACGTCTCCAACATCGAGGCCACTGATGGCGACGAGTCTAGGCCAAGCACAATAGAAGATTCGTCGTCAATAGTGTCGGACAATAGTGGCAACGGTCCCCTGAAGTGTAAATTCTGCGATAAacatttcaaatacaaaaaatcatTAGCAACTCATGAGCTGAAACATTTTGAACTTGAAAAAACTGAGCAGAATCAAAACCAGGGAAGCTCAGTAAACGAAGAAATAGAAGCGGAGGGGAACGCATCGAGCAGCCTGTTGAACGAGTCGTACCGCGAGGATGAGGAAGAGGAGCAGGAGTCGAGCCAGGAGGAGGGCGACGACAACACGTGCGACATCTGCGAGAAGCAGTTCTCGTACCGGCGGCTGCTCGTGCATCACAAGCGCACCAAGCACAACATGAGCTCCGGCACCAAGCGCGCCAACGTCGTCCTCAAGAACTGCCTCGTGCGCTGCCTCATTTGTGACCTCGAGATGAGCGTCGGCGCCATCAACGATCACAACAAACAGCACATCCAACAGAACATGAAACCGCGCAACCTCTACACGTGCACCGACTGCGGCGACAAGTTTAAGAGTTGCAATGCTCTGGCCAACCACATCAAGCTGGTGCACAGGCTTAAGCGGCTGGCGCCCAAGCAGTTCGACGGTGCTGATCTGGCGGATTTTTGTGAGGTCGTTGTGACGAAAGCGGAACCCCTGGACGAGATCCAGAGTCACAACGGCTTTGGTGAGGTTCCGGAGGAGCAAGAGGGCTCGCCCTTGGTCAATCTCAGCGGATTTAATTGTACTATCTGTGGAAAGACCATGCCCACTCTGATTTCCCTGAAACGTCATGTCAATTGGCATTCGAATGTTGGAAATAGTCTAGAAAAAAAGCTAGAGTGCTTTGTGTGCAAAgagACGTTCCGGTTTCAATGCCATTACAAATTGCATATGCGCGAGCACTACCGTGACACTAATCTTGACCCCAAACTGCTCACGTGCACTATCTGCAATCGGAAAAGTAAACACTTGAGGGCTGCTCAAGCGCATATGAACTACCACAAACAAACCCGATTCAAGAACAAAGACTATCAGTGTTCCATATGCAAGCGTGTTTTCCAATACCGAAAGGTCTATCTCTCGCACATGGCAATACACTACAAACGAGGTGAAAGTCAAAACACGATTGTAGGTGACTTATTACCTACCACTGCCGATAAAACTGTGTTTGACGGTAGTCATACTTGCCTTCATTGCGGAAAAGTCTGTGACTCTGAGAACTCTCTGAAACATCATATGTCTTGGCATAAATCGAAGACTTTGCTATTTGGCGCCAGACACGAGTGTCCAATTTGTCACGTCATGTTCACTAATAAAAAAAGGCAAGAGCTACATACAAGAACTCATTATGAAGATGATAACGGTCCATTCAAGTGTACGATATGTGGCAAAGGCTACACCGACGAAGATTACTTCCGTCGGCACGTGAAAGGTCACAACTTCGATCACCAGTCTCACAAAGACCGAATAGCGAAATTGCGGAAGGACAAGGTGAAGTGTCCCATTTGCGTACGCTACTACCCTGACTGGGTGAAGCTGATCCGGCACCTGCGGCGCACGCACCCCGAGAGTAAGATGGTGAAGCCGGACCCCGACGCGCCCACGGCGCGCGTGTTCACGTGCAAGCTGTGTGCCAAGGCCTTCCGCGACGAGCGCCGGCTGCGCCACCACGAGGACTCGCATTTGCGTAAACCAGAGTTCTTCAAGTGCAAGTTCTGTGGGAAGAAAACTATATCACTCAAAAATCATAACCTACACATTAAAGGACATCTCACTTCCAAACATTTGGACAATCCTCTCAAATGCACTCAGTGTGAGGAGACGTTCATCAAGGGATATGATTTGCATTACCATTTGCGAGATGTGCATAACATTAATGAAACATGGATCGCAGAACGCAAAGAGCAAACTTTAAATGGCCCTTTGAAAGAGTTTCAATGTTCAATTTGTCTTAAAATACTTGCAAGTAAAGGCAACTATGAGAGGCACTTGGATTACCACAATTCTCTAAGGTGTAATTATTGCTACGACTATTTTAGTTCCCTGAGGTTCCTAGAAGGACATCTGACTTTCAGTTGTGATAAAAAGAAGTTAGTTGGTGACACTGAGATATACCCGAGGAAGATTAAATGTAATATTTGCTACAAACCATTCCATTTACAAGTTAAATTGGATTGCCATTTGCGCACGCAACATAATATAAAAGTGTCTAAAGAAGCTTCAAAGGGCAAAAAAGACCTTGTATGTGATTATTGCTTTAGAGTATTCGAAAACCTTGATGCTCTTACTGGGCATAAAGTATATCATCGTACCGTCGGTTATTACGGTTGTATTTATTGCAAGAGGAAATTCAACACTTTGACTCTCTACAGGAAACATAAGAACCATCACTTTGCTCAGTTAAACGTGGACAACCCTACCAAGTGCGAACACTGCGATGAGACTTTTGTTGCTTTCCGGGAAATGATATACCACATGAGGGATGTCCACGGGGACAACAAGGAGTGGCTTGTAATGCCAAAGGAGTCGATTGAAGAGACGTGCCCCGTGTGCAACAAGACGTTCTTCAACCTGCACCGACACTTAGACTACCACGAGGAGAACCGCTGCAAGAAATGCGGCGAATACTTCTACTCGCGTACCGACCTCGACAACCACCTGTGCGCCATCGAGAGCGAGGACGAGACGGGCAACGACGAGCGCGATGTGCGCCCCAAGTACGAGGAATGCCGCTTCTGCTTCAAGCCCATCACCAGGAAGAGCTCCAAGGCGAAGCATGAACACATACATAAAGGCTCCGGATCTATCTCTTGTAGATTCTGTTCGCACAAATTTAAAACAATGGACGCATTTAACATTCATGCATTTTCCCATCGCAACCGCAAGTACAGAAAAAATCCATTAAAGTGTCGGAAGTGCGGCGAGAAATTTATACAATACGGGCCCTTCATAAAGCACATGAGAGGCGTGCATAATTTCGTTCAAAAAATGCACTATCGAGCGACCGTGAAAGCGGAGCCTTGTGTGGTATGCGGAGACGAGTTCCCCAACCTGCACAACCACTACCGAGCGCATCTGCAGAACCAGTGCACGTCGTGTCTCAAATACTTCACCTCAGCCAAGGTGTTCGCCGATCACGAGTGCGGCAAGGAGGACTCCGACCCCGCCAAGGTGTTCACGTGTGACGCCAACTTGCCCCTCTTGATCAACACCTATGTTCCGAAAGACGAACGAGACGAACAAAAATATTACGGCTACGGAGATGATGAGGAGGAGGAGTTGGGCGGCGGCGTGCGGCTCCAGGGCCACATAATAGATGAAGAAAGTCAGAATTCCAATGAGAACGATGACTTCCAACTCCAGTGTCCGATAATATCGGATGTGCTGTCGCTGTGCCAGAAGCAAGAGGCGGAGGAGCGCGCGCCCGCGTCCGCGCCCAATCCTGAGCACGAGGTCATCGACctctccgacgatgaggtgggcATAGTTGACAGTGCTAACTGTCCCACCATCACCATTGATGATTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNSVQLADMVMECARIKIFEGDGLPDKVCAECIQKLSSAYIFKQQCERADQELRRNYVPPPGSSSTPVPPNRTSSDSVSSTHTEATNQTKPSQASEVDSAKRNSRKRSHESLEIASASSKSNEFRPTTSKRIEELKSSHKKPRLSNYYMDSDYEDNSASQVSAETDSDEPLLRDEFKCKVCGRQFPSAKSLGAHFRFCGKTNKAKETLTENVLVTIPKKNVQDATDIEDKISCELCGKSFKLKIMLKRHQETCGKSPQKTSPKPLEKELLISLEPIDGIHANRIKCTMCITTFKTVENLEKHMRVVHAAVLPKVKTEPKANNGKVSVPCIYCKKPFDDYYVHSEHFSKCPESTNASTFPCPVCKKVTTRKAAYFRHIKDVHFEPRMWMLKPEAPEQGSAAERFECRMCCKRLPTEQLLITHLAAHVSNIEATDGDESRPSTIEDSSSIVSDNSGNGPLKCKFCDKHFKYKKSLATHELKHFELEKTEQNQNQGSSVNEEIEAEGNASSSLLNESYREDEEEEQESSQEEGDDNTCDICEKQFSYRRLLVHHKRTKHNMSSGTKRANVVLKNCLVRCLICDLEMSVGAINDHNKQHIQQNMKPRNLYTCTDCGDKFKSCNALANHIKLVHRLKRLAPKQFDGADLADFCEVVVTKAEPLDEIQSHNGFGEVPEEQEGSPLVNLSGFNCTICGKTMPTLISLKRHVNWHSNVGNSLEKKLECFVCKETFRFQCHYKLHMREHYRDTNLDPKLLTCTICNRKSKHLRAAQAHMNYHKQTRFKNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESQNTIVGDLLPTTADKTVFDGSHTCLHCGKVCDSENSLKHHMSWHKSKTLLFGARHECPICHVMFTNKKRQELHTRTHYEDDNGPFKCTICGKGYTDEDYFRRHVKGHNFDHQSHKDRIAKLRKDKVKCPICVRYYPDWVKLIRHLRRTHPESKMVKPDPDAPTARVFTCKLCAKAFRDERRLRHHEDSHLRKPEFFKCKFCGKKTISLKNHNLHIKGHLTSKHLDNPLKCTQCEETFIKGYDLHYHLRDVHNINETWIAERKEQTLNGPLKEFQCSICLKILASKGNYERHLDYHNSLRCNYCYDYFSSLRFLEGHLTFSCDKKKLVGDTEIYPRKIKCNICYKPFHLQVKLDCHLRTQHNIKVSKEASKGKKDLVCDYCFRVFENLDALTGHKVYHRTVGYYGCIYCKRKFNTLTLYRKHKNHHFAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDNKEWLVMPKESIEETCPVCNKTFFNLHRHLDYHEENRCKKCGEYFYSRTDLDNHLCAIESEDETGNDERDVRPKYEECRFCFKPITRKSSKAKHEHIHKGSGSISCRFCSHKFKTMDAFNIHAFSHRNRKYRKNPLKCRKCGEKFIQYGPFIKHMRGVHNFVQKMHYRATVKAEPCVVCGDEFPNLHNHYRAHLQNQCTSCLKYFTSAKVFADHECGKEDSDPAKVFTCDANLPLLINTYVPKDERDEQKYYGYGDDEEEELGGGVRLQGHIIDEESQNSNENDDFQLQCPIISDVLSLCQKQEAEERAPASAPNPEHEVIDLSDDEVGIVDSANCPTITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_01072797;
- 80% Identity
- -