Efoe035355.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747118.1:10274505-10278754[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.2e-13 2.7e-09 37.7 0.1 7 50 193 238 189 240 0.85 2 4 4.6e-11 1.9e-07 31.8 0.2 7 48 245 288 243 296 0.85 3 4 9.2e-05 0.39 11.6 0.1 29 50 304 325 289 329 0.78 4 4 0.0005 2.1 9.2 0.2 7 23 332 348 326 351 0.87
Sequence Information
- Coding Sequence
- ATGTCCGAAGAAATGGCGGTTAGTGATAGCCCAAGTGGGGAAGAAGCCGTTGTAAAAGCCGAAGCGTTGCTAGCGAGTGCCGAGGACGCGGTGCCGGAGGCCCCCGAACCCCCGAGCGCGCCTGCGGTCTCGGAGCCTGAAGAAACCAAGCCAATCAAATCAGAACCAGAATGGAGTTCATTCGAAGCCCCAGACCCTGCAGAAGAGCCCGATGATAACAAACGAGGTGTGAAACGCAGAGCATCTGCCGCTTTCAGTGATGCTGCTGACGAAGACTTTAAAGGCTTCCCTAAAATGGAGCTGGATGACTCTATTGTGGATTACAAGAGAGTTCTAGACAACCTAGAGGCTGAGGTGGCCGCAGTGAGCAAAACAGTGGTGCCTCTCAGGACAGTGATGGGGACACCTACGGCTCCGCCTCGGGCCAGCAAGCGAGCTCGGCAAGACACAGATGGATCAAGACCTTCTTCAGCCCTCTCCTCCAGGTCTGAAGGTGACGGGGTTTCGTCCACTGAGGTGAGCTCGTCTCCAGCGGCCCGCGGCCGGCGCGCCACCACGGAGATATCGTCTCCGTTGCTCCGCGTGCCACTGGAGAGGGGCTGGAAGCGCGAGCTGGTGTACCGCGCCGCGCTCGACCAGCACTCGCGGCGCAACGCCGACATATACTACTACACGCCGCAGGGCAAGAAGCTACGCTCCACTAGGGAGGTGAGTGAGATGTCGTTTCCGCTGCTCCGCGTGTCGCTGGAGAGGGGCTGGAAGCGTGAGCTGGTGTCCCGCGCCGCGCTTGGCCAGCACTCGCGGCGCAACGCCGACATATACTACTACACGCCGCAGGGCAAGAAGCTACACTCCACTAGGGAGAAGCGCGAGCTGGTGTACCGCGCCGCGCTCGACCAGCACTCGTGGCGCAACGCCGACATATACTACTACAAGCCGCAGGGTAAGAAGCTACCCTTCACGAGGGAGGTGAGTAAGATGTCGTCTCCGCTGCTCCGTGTGCCGCTGGAGAGGGGCTGGAAGCGCGAACTGGTGTACCGCGCCGCGCTCGACCAGCACTTGCTAGTGTTGAGTTACCTCATTTGTCATACACATTTCGATAATTGA
- Protein Sequence
- MSEEMAVSDSPSGEEAVVKAEALLASAEDAVPEAPEPPSAPAVSEPEETKPIKSEPEWSSFEAPDPAEEPDDNKRGVKRRASAAFSDAADEDFKGFPKMELDDSIVDYKRVLDNLEAEVAAVSKTVVPLRTVMGTPTAPPRASKRARQDTDGSRPSSALSSRSEGDGVSSTEVSSSPAARGRRATTEISSPLLRVPLERGWKRELVYRAALDQHSRRNADIYYYTPQGKKLRSTREVSEMSFPLLRVSLERGWKRELVSRAALGQHSRRNADIYYYTPQGKKLHSTREKRELVYRAALDQHSWRNADIYYYKPQGKKLPFTREVSKMSSPLLRVPLERGWKRELVYRAALDQHLLVLSYLICHTHFDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -