Efoe019695.3
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963556455.1
- Location
- OY747104.1:3128484-3142116[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.4e-64 9e-60 203.7 12.2 1 222 32 247 32 250 0.93 2 14 0.029 4.1e+02 1.3 0.0 189 222 260 293 255 296 0.81 3 14 0.029 4.1e+02 1.3 0.0 189 222 306 339 301 342 0.81 4 14 0.029 4.1e+02 1.3 0.0 189 222 352 385 347 388 0.81 5 14 0.029 4.1e+02 1.3 0.0 189 222 398 431 393 434 0.81 6 14 0.029 4.1e+02 1.3 0.0 189 222 444 477 439 480 0.81 7 14 0.029 4.1e+02 1.3 0.0 189 222 490 523 485 526 0.81 8 14 0.029 4.1e+02 1.3 0.0 189 222 536 569 531 572 0.81 9 14 0.023 3.3e+02 1.6 0.0 188 222 581 615 577 618 0.83 10 14 0.029 4.1e+02 1.3 0.0 189 222 628 661 623 664 0.81 11 14 0.029 4.1e+02 1.3 0.0 189 222 674 707 669 710 0.81 12 14 0.027 3.8e+02 1.4 0.0 189 222 720 753 715 756 0.82 13 14 4.2e-15 6e-11 43.4 3.4 189 265 766 842 761 864 0.81 14 14 2.4 3.4e+04 -5.0 11.0 119 163 884 928 846 940 0.47
Sequence Information
- Coding Sequence
- ATGTcaccttgctcgaatttggagcagcccaactggggaagtacctacgccttgcagaagaccacagccataataacattatctactatacaaGCGGAGCAACGACTAGCGGCGCgtcgggcggcgcgggcggagGCGCGCGAGATACGCATGCGCGAGTTGGAGCGGCAGCAGCGTGAGCAGGAAGACCATGCAGACAAAGCCTACGATATGTACGCCGAAACGGTGGGGCGGCGCGCAGGCTCCCGGCTGACGGGGCTGAGCCCCGCGGCGCACCACACCCCGCGGCGCGCCTCGGAGGACTCCGCCGATGACAGCTTCAACGTCAAGGATCTCAGGGGGGAGTTAAAAGAAGTAGAAGAGAAATTCCGAAAGGCCATGATCCTGAATGCACAGCTAGACAATGACAAAGCGGCGCTCGGTTATCAGCTCGAGCTACTGAAGGATCGTATCGAGGAATTACAAGAAGACTACGCGCAGTTACAGCGTGAGCACAAAGAGAAATGCTCCGCCCACGAGCGCCTAAAACGCGAGCACGCGTCCCTCGAGAGGGAACTAGGCGCAGCCCGAGACGCGGTCCACGCGCGGAACGCCGCCGCCGCAGACGCGGGCTTCGCGTTCGTCGATGCGGCGCCGGCTGCGAATGGAGACGAGGGGCAGGTGCACACGTTCCCGCCTCTCGCGCTCGTGTCGCACCAGAATGAGAAGCTGCTGAATGACGCTGGAGAAGGGACGCTAGGTGAGGGCATGTCACCTCCGACAGGGTCCGTGGACGCGGCTGACGGAGACGAGGGGCAGGTGCACACGTTCCCGCCTCTCGCGCTCGTGTCGCACCAGAATGAGAAGCTGCTGAATGACGCTGGAGAAGGGACGCTAGGTGAGGGCATGTCACCTCCGACAGGGTCCGTGGACGCGGCTGACGGAGACGAGGGGCAGGTGCACACGTTCCCGCCTCTCGCGCTCGTGTCGCACCAGAATGAGAAGCTGCTGAATGACGCTGGAGAAGGGACGCTAGGTGAGGGCATGTCATCTCCGACAGGGTCCGTGGACGCGGCTGACGGAGACGAGGGGCAGGTGCACACGTTCCCGCCTCTCGCGCTCGTGTCGCACCAGAATGAGAAGCTGCTGAATGACGCTGGAGAAGGGACGCTAGGTGAGGGCATGTCATCTCCGACAGGGTCCGTGGACGCGGCTGACGGAGACGAGGGGCAGGTGCACACGTTCCCGCCTCTCGCGCTCGTGTCGCACCAGAATGAGAAGCTGCTGAATGACGCTGGAGAAGGGACGCTAGGTGAGGGCATGTCATCTCCGACAGGGTCCGTGGACGCGGCTGACGGAGACGAGGGGCAGGTGCACACGTTCCCGCCTCTCGCGCTCGTGTCGCACCAGAATGAGAAGCTGCTGAATGACGCTGGAGAAGGGACGCTAGGTGAGGGCATGTCATCTCCGACAGGGTCCGTGGACGCGGCTGACGGAGACGAGGGGCAGATGCACACGTTCCCGCCTCTCGCGCTCGTGTCGCACCAGAATGAGAAGCTGCTGAATGACGCTGGAGAAGGGACGCTAGGTGAGGGCATGTCGTCTCCGACAGGGTCCGTGGACGCGGCTGACGGAGACGAGGGGCAGGTGCACACGTTCCCGCCTCTCGCGCTCGTGTCGCACCAGAATGAGAAGCTGCTGAATGATGCTGGAGAAGGGACGCTAGGTGAGGGCATGTCATCTCCGACAGGGTCCGTGGACGCGGCTGACGGAGACGAGGGGCACGCGCACACGTTCCCGCCTCTCGCGCTCGTGTCGCACCAGAATGAGAAATTGCTGAATGATGCTGGAGAAGGGACGCTAGGTGAGGGCATGTCATCTCCGACAGGGTCCGTGGACGCGGCTGACGGAGACGAGGGGCAGGTGCACACGTTCCCGCCTCTCGCGCTCGTGTCGCACCAGAATGAGAAGCTGCTGAATGACGCTGGAGAAGGGACGCTAGGTGAGGGCATGTCATCTCCGACAGGGTCCGTGGACGCGGCTGACGGAGACGAGGGGCAGGTGCACACGTTCCCGCCTCTCGCGCTCGTGTCGCACCAGAATGAGAAGCTGCTGAATGATGCTGGAGAAGGGACGCTAGGTGAGGGCATGTCATCTCCGACAGGGTCCGTGGACGCGGCTGACGGAGACGAGGGGCACGTGCACACGTTCCCGCCTCTCGCGCTCGTGTCGCACCAGAATGAGAAGCTGCTGAATGATGCTGGAGAAGGGACGCTAGGTGAGGGCATGTCATCTCCGACAGGGTCCGTGGACGCGGCTGACGGAGACGAGGGGCACGTGCACACGTTCCCGCCTCTCGCGCTCGTGTCGCACCAGAATGAGAAATTGCTGAATGATGCTGGAGAAGGGACGCTAGACGTCCGGTTGCAAAAGCTGCTGAGCTCGAAGCAGTCGCTGGAGGGCGAGGTGCGGCGCCTCAAGCTGCAGCTCAACGAGGAGCGCCACAacggcgtggcgcgcgcgcacgaCCAAGACCTCGAGTCCGAGCTGGAGGCGCTCCGCAAGTCGAGCGCGGAGGCGaaggcgcgcgcggcgcgggccgAGGCGGAGGCCGCGCTGCaggccgccggcgccgcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGCGAGGCCCGAGAAGCTCTAAACCGAGTTGAGGAGCTGGAGACAGAGAACAGCCATCTCACCAAGCGGCTCGACAAACTCAAGAACGCCAAGTCCGCGCTACTCAAGGAGCTGTGA
- Protein Sequence
- MSPCSNLEQPNWGSTYALQKTTAIITLSTIQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGSRLTGLSPAAHHTPRRASEDSADDSFNVKDLRGELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEDYAQLQREHKEKCSAHERLKREHASLERELGAARDAVHARNAAAADAGFAFVDAAPAANGDEGQVHTFPPLALVSHQNEKLLNDAGEGTLGEGMSPPTGSVDAADGDEGQVHTFPPLALVSHQNEKLLNDAGEGTLGEGMSPPTGSVDAADGDEGQVHTFPPLALVSHQNEKLLNDAGEGTLGEGMSSPTGSVDAADGDEGQVHTFPPLALVSHQNEKLLNDAGEGTLGEGMSSPTGSVDAADGDEGQVHTFPPLALVSHQNEKLLNDAGEGTLGEGMSSPTGSVDAADGDEGQVHTFPPLALVSHQNEKLLNDAGEGTLGEGMSSPTGSVDAADGDEGQMHTFPPLALVSHQNEKLLNDAGEGTLGEGMSSPTGSVDAADGDEGQVHTFPPLALVSHQNEKLLNDAGEGTLGEGMSSPTGSVDAADGDEGHAHTFPPLALVSHQNEKLLNDAGEGTLGEGMSSPTGSVDAADGDEGQVHTFPPLALVSHQNEKLLNDAGEGTLGEGMSSPTGSVDAADGDEGQVHTFPPLALVSHQNEKLLNDAGEGTLGEGMSSPTGSVDAADGDEGHVHTFPPLALVSHQNEKLLNDAGEGTLGEGMSSPTGSVDAADGDEGHVHTFPPLALVSHQNEKLLNDAGEGTLDVRLQKLLSSKQSLEGEVRRLKLQLNEERHNGVARAHDQDLESELEALRKSSAEAKARAARAEAEAALQAAGAARLAAQLQRLKAQADARDDAEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -