Efoe017898.1
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747102.1:18203766-18206384[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-08 2.3e-05 25.2 0.0 2 35 12 45 11 50 0.92 2 2 0.88 5.4e+02 1.6 0.1 20 29 351 360 350 361 0.89
Sequence Information
- Coding Sequence
- ATGGCATCGACATCAAAAAGGCAAAAATGGGACAAAGATTCAATGGCTATGGCTATACTGGCTAttcgtgaaaaaaaaatggagttTTTAAAAGCATCGAAAGCTTTTGGCGTGCCAAAAACGACCCTTATCCGTTTGTCTCAAAAAAGTGATAATATGTCACTAGATGAGGTGACAAATTTTAAATTGGGAAGAAAAGCAACACTTCCTGCCGAATTAGAGGCTGACTTGGCTAAATATGTGCTTGAAATGGAGGCAGCAGGGTTCGGGTTGACTCGAAAAGATATGAAGTGCTTGGCTTATCAACTagctgaaaaaaataatttaactcaTAATTTCTCCAAAGAAAACGAGTCTGCTGGTAAAACGTGGTTGCGACTGTTTCTAAGACGTCACCCAGAACTCTCTTTTCGTCAACCCACGGGTACGTCTATTGCGAGGTTAAAGGGCTTCAACAAAGAAAACGTTAGTGCGTTTTATACATTATTAGAAGACGCGATggataaatacaaatatactgccaacaatatttacaaCGTTGATGAAACTGGCATATCAGTTGTGCCATCGAAATTGCCAAAAGTATTGGCTAAGAAAGGAAAAAAGCAAGTTGCAGCCACAACATCAGCTGAAAGAGGTTCTACAGTTACTTGCGTAATGTGTATGAGCGCTAGCGGTTCATTTGTTCCCCCAATGATGATTTTTCCACGCAAACGGGATAATCCTCTTTTAATGAAAGGGGCTCCACCTGGATCAATTCACGCTTGTCACCCATCAGGCTGGACTCAGACTGAACTTTTTACGAAATGGTTTAAGCATTTCATACAGTGCGTTAAGCCATCCGAAGCTTCTCCTGTACTTTTGATATTAGATGGTCATGCTTCTCATACCCGTAACATTGAAATGATTGATTTAGCGCGCAAAAACCACGTGCAACTGTTATCATTACCTCCACATTCAAGTCACAAGATTCAGCCACTTGACCGTACATTCATGGGACCCCTAAAAAAATACTTCACAGAAGAAATTCGGCAGTGGATGCGAAATAAAGCTCAAGCAGCAACGCACTATGACATTGCAGAACTCTTTGGTCGTGCGTATATAAGAGCCCAGCGTGCTGAGTTTGCTATTAATGGTTTTCGCGTCACAGGGATCTGCCCATTAGACAGGAATGTTTTTCAGGATCATGATTATATTGATGATTCATTAGCAACAGATATAATACTTCCTACAAATTCTCATATTCAGCAAGCACAAGTAATCAGCGCAAGTCAATCTCAAACACAAACAGTAGTTAACGAAATTCAATTGACAGGTGATGGGTTTCATGCTACAGTTGAAAGCACTATCCATGAAGCGGCTCCATCAAATCCAGTTGAGCCAACAATAATTATCGAATCTCCACTGATTGCTACGATTGCATCTCAACAGCAAAGTACAATATTGGCGAAACCGACTGAACAATCTCAACCGTTGTCTAAAAGTGAAACTCAATCTCAAATTCAAGCATCGTTACCATCTACGAATGAATCACAACCCACCATTTTAAATGAAAGTCACGTTATTGAGAGTGCGGCGATGGAATCAATTGATGAACCCCAACTGACTGGCAACAAAAACCAGATTCTACACCATGATCAAGCTTCAGTGGGAATTATACCGATAAATCAAGTCCAAACGTTGGCTCAATTGGCCTTAGCAGTCATTTTACTTGAACAAAAGTCATTTTCCACTGCAAAAGATATTAGCAATAATGACAAAGTTTTTCAAGACACCGATCCATCCAAAGAGGCATCTAATGCCATAAACTTACACGCTGGTCCTTCCACATCTACACCTTATTTATCACCAAGACAGTTGTGTCCTGTGCCACGTTTAAGCAAAAAATCTAGTAATAAAGGAAGAAAGGGCACAAAACCGACGTTGTTGACATCATTACCATATAAATTGGATTTGGAAACATCAATAAAGAAAAAGGAAGAAGCTGAATtactaaaaaagaaattaaatttgACAAAAGAGTTGAAAGTGCCAAAAAACAAAGTAGAGCCAAAGAAAAAGACTGAATCTAAGAAGAAATTAAAAAGCAGCACGCAAGAAGAACCTAAAAGTGAAGCccaaaaacagaaaaaaagccctagaaacattaaaaataaaccatctacttccaagaaaacaaataatacaGATAGTGCTCTAAAAGAAATACCACAGCCACTCCAGAATGATAAGGGCAAGTCAAAGAAAGCAGAAGAGACTAAACAGAAGACTGCACCAAAGGGCAAGTCAAAAAAAGGAGAAGAACAGAAGACTGCGCTTAAACGAAAATCAAAGACCAACCAAAAAACTGCGAGACAGACAGCTCAAAAGAAGAGAAAAACTACAAATGTCCTGCTTTCCAGTTCTGAAGAAGATAATTATTCAGTAAACGATGATACAGACGAAAGTCCTGATCGAAGTGTGACTGGTAATGCTAAATGTTTGTATTGCGATGGTTTATTTTCGGAGGATATTCGTGGGGAGCAATGGATACAGTGTTCTTCTTGTCTGCGATGGGCCCATGAGGAATGCGCTGGTGTAGATGGCATTTCGTTTATGTGTGAATATTGCAATAACTAA
- Protein Sequence
- MASTSKRQKWDKDSMAMAILAIREKKMEFLKASKAFGVPKTTLIRLSQKSDNMSLDEVTNFKLGRKATLPAELEADLAKYVLEMEAAGFGLTRKDMKCLAYQLAEKNNLTHNFSKENESAGKTWLRLFLRRHPELSFRQPTGTSIARLKGFNKENVSAFYTLLEDAMDKYKYTANNIYNVDETGISVVPSKLPKVLAKKGKKQVAATTSAERGSTVTCVMCMSASGSFVPPMMIFPRKRDNPLLMKGAPPGSIHACHPSGWTQTELFTKWFKHFIQCVKPSEASPVLLILDGHASHTRNIEMIDLARKNHVQLLSLPPHSSHKIQPLDRTFMGPLKKYFTEEIRQWMRNKAQAATHYDIAELFGRAYIRAQRAEFAINGFRVTGICPLDRNVFQDHDYIDDSLATDIILPTNSHIQQAQVISASQSQTQTVVNEIQLTGDGFHATVESTIHEAAPSNPVEPTIIIESPLIATIASQQQSTILAKPTEQSQPLSKSETQSQIQASLPSTNESQPTILNESHVIESAAMESIDEPQLTGNKNQILHHDQASVGIIPINQVQTLAQLALAVILLEQKSFSTAKDISNNDKVFQDTDPSKEASNAINLHAGPSTSTPYLSPRQLCPVPRLSKKSSNKGRKGTKPTLLTSLPYKLDLETSIKKKEEAELLKKKLNLTKELKVPKNKVEPKKKTESKKKLKSSTQEEPKSEAQKQKKSPRNIKNKPSTSKKTNNTDSALKEIPQPLQNDKGKSKKAEETKQKTAPKGKSKKGEEQKTALKRKSKTNQKTARQTAQKKRKTTNVLLSSSEEDNYSVNDDTDESPDRSVTGNAKCLYCDGLFSEDIRGEQWIQCSSCLRWAHEECAGVDGISFMCEYCNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00794360; iTF_00149314;
- 90% Identity
- -
- 80% Identity
- -