Atur026378.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990290.1:15872061-15874694[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-10 4.4e-07 31.2 0.0 2 40 12 50 11 53 0.90 2 2 0.93 1.1e+03 1.1 0.0 21 29 352 360 351 361 0.90
Sequence Information
- Coding Sequence
- ATGGCATCGACTTCAAAGAGGCAAATATGGGACAAAGACTCAATGACTATGGCTATACTGGCTatccgtgaaaaaaaaatgggtttttTAAAAGCCTCAAAAGTTTTTGGCGTTCCAAAAACGACCCTCATACgtttatctaaaaaaaattataatataccaCTAGAGGAGGTGACAAATTTTAAACTTGGAAGGAAAGCTACACTTACTGCCGAATTAGAGGCTGACTTAGCGAAATATGTGCTTGAAATGGAGGCATCAGGGTTCGGGTTGACGCGGAAAGATATAAAGTGTTTAGCTTTTCAACTAgcggaaaaaaataatttaaatcatAGTTTCTCCAAAGAAAACGAGTCTGCCGGTAAAACGTGGTTGCGATTGTTTCTAAGACGGCACCCAGAACTCTCTTTTCGTCAACCCACGGGCACGTCTATTGCGAGGTTAAAGGGCTTCAACAAAGAAAACGTTAGTGCATTTTATACATTATTAGAAGACGCAATGGATAAATACAAATTCACTGccaacaatatttacaatgttGATGAAACTGGCATATCAGTTGTGCCATCAAAATTGCCAGAAGTATTGGCCAAGAAAGGGAAAAAGCAAGTTGCGGCCACAACATCAGCTGAAAGAGGTTCTACAGTTACTTGCGTAATGTGTATGAGCGCTAGTGGTTCGTTTGTTCCCCCGATGATGATTTTCCCACGCAAACGGGATCATCCTCTTCTAATGAAAGGGGCTCCACCTGGTGCAATTCACGCTTGTCACCCATCAGGCTGGATTCAGACTGACCTTTTTACTAAATGGTTTAAACATTTCATACAGTACGTTAAGCCATCCGAAACTTCTCCAGTTCTTTTAGTATTAGATGGTCATGCTTCGCATACCCGTAACATTGAACTGATTGATCTAGCACGCAAAAATCATGTGCATCTTTTATCATTACCTCCACATTCAAGTCACAAGATTCAGCCACTCGACCGTACATTCATGGGACCCCTAAAAAAATACCTCACAGAGGAAATTCGCCAGTGGATGCGCATTAACACTCAGGCAGCAACGCATTATGATATTGCAGAACTCTTTGGTCGTACCTATATAAAATCCCAGCGTGCTGAGTTGGCTATTAATGGTTTTCGAGTAACTGGCATCTGTCCATTGGACAGGAATGTTTTTCAGGATCATGACTTTATTGATGATTCATTAGCAACAGATTTGAATCTTCCTACAGGTTCTCATACACACGTAATCAACACAAGTCAATCTCAAACACAATCAATAGTTAACGAACCTCAATCGACTCAGCAAGCACACGTCATCAACACAAGTCAATCTCAAACACGATCAATAGTTAACGAACCTCAATCGACAGATGATGGGTTTCATGCTACAGTTGAAAGCACTATCCATGAAGCTGCTCAACATCCTTTAAATCCAGTTGAGCCATCCATAATAATCGAATCTCGACCAATTGCTATGATTGAATCTCAACAGCAAAGTACAATATTGGCAAAACCGATTGAACAAAGTCAACCGTTGTCGGAAAGTGAAGCTCAATGTCAAATTGAAGCATCGTTAGAATCTACGGATGAATCACAACCCACAGTTCTAAATGAAAGTCACTTTCAGAGTGAGGTGGTGGAATCAATTAACGAGCCCCAACCTACTGCCAACAAGAACCAAGACCTGAACCATGATAAAGCGTCCGTGAGAATTATAGCGAAAAACCAAGTCCCAAGATTGTCTCAATTGGCATTAGCAGTTACTTTATTTGAACAAAAGTCATCTTCCACTGCAAAAGATATTAGCGACAAAGAAGACATTACTCAAGATACCGATCCATCTAAAGAGACATCTAATGTCACAAACTTACCCGCTGGTCCTTCCACATCTTCATCTTATTTATCACCAAGACAGCTGTATCCTGTACCAATTTTAAGCAAAAAAACTAGTAATAGAGGAAGAAAGGCCACAAAACCCACATTGTTGACATCATCACCATATAAAGTAGAATTGGAaacatcaattaaaaaaaaggaagaaacagaattacttaaaaagaaaagaaatgtGACAAAAGAGTTGGAAGTGCAAAAGAAAGCAGTAGAGCAAAACAAAAAGACTGAATCTAAGAAGAAATTAAAAGGCAGCACGCAAGAAGAACCTAAGAATAAAGCTCAAGAAAAGAAGAAAAGCCCTGGAAGAAAACCCTCTACTTCCAAGAAAATAACGAATACAGAGAGTGTTTTAAAAGAAATTCCACAACTACTCCAAAATGATAAGGGCAAGTCAAAGAAAGAAAAAAGGACTAAACAGAAGACTGCACCTAAACGAAAATCAAAGAACAACCAAAAAACATCGAAACAGACAGCCCAAAAGAAGAGAAAGACTACAAAGAAGGTCCTGCTATCCAGTTCTGAAGACGATAATTATTCACTGAACGATGATACAGATGAAAGTCCAGATCGAAGTGAGACTGATAACGCTAAATGTTTGTATTGCGGTGGTCTCTTTTCGGAGGACGTTCGTGGGGAGCAGTGGGTACAGTGTCCTTCTTGTCAGCGATGGGCACATGAGGAATGCGCTGGTGTAGATGgcgttttgtttttatgtgaaTATTGCAAAAAATGA
- Protein Sequence
- MASTSKRQIWDKDSMTMAILAIREKKMGFLKASKVFGVPKTTLIRLSKKNYNIPLEEVTNFKLGRKATLTAELEADLAKYVLEMEASGFGLTRKDIKCLAFQLAEKNNLNHSFSKENESAGKTWLRLFLRRHPELSFRQPTGTSIARLKGFNKENVSAFYTLLEDAMDKYKFTANNIYNVDETGISVVPSKLPEVLAKKGKKQVAATTSAERGSTVTCVMCMSASGSFVPPMMIFPRKRDHPLLMKGAPPGAIHACHPSGWIQTDLFTKWFKHFIQYVKPSETSPVLLVLDGHASHTRNIELIDLARKNHVHLLSLPPHSSHKIQPLDRTFMGPLKKYLTEEIRQWMRINTQAATHYDIAELFGRTYIKSQRAELAINGFRVTGICPLDRNVFQDHDFIDDSLATDLNLPTGSHTHVINTSQSQTQSIVNEPQSTQQAHVINTSQSQTRSIVNEPQSTDDGFHATVESTIHEAAQHPLNPVEPSIIIESRPIAMIESQQQSTILAKPIEQSQPLSESEAQCQIEASLESTDESQPTVLNESHFQSEVVESINEPQPTANKNQDLNHDKASVRIIAKNQVPRLSQLALAVTLFEQKSSSTAKDISDKEDITQDTDPSKETSNVTNLPAGPSTSSSYLSPRQLYPVPILSKKTSNRGRKATKPTLLTSSPYKVELETSIKKKEETELLKKKRNVTKELEVQKKAVEQNKKTESKKKLKGSTQEEPKNKAQEKKKSPGRKPSTSKKITNTESVLKEIPQLLQNDKGKSKKEKRTKQKTAPKRKSKNNQKTSKQTAQKKRKTTKKVLLSSSEDDNYSLNDDTDESPDRSETDNAKCLYCGGLFSEDVRGEQWVQCPSCQRWAHEECAGVDGVLFLCEYCKK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00654197;
- 90% Identity
- -
- 80% Identity
- -