Egra019975.1
Basic Information
- Insect
- Ephydra gracilis
- Gene Symbol
- Hr39
- Assembly
- GCA_001014675.1
- Location
- JXPQ01047157.1:1-5091[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.22 2.3e+03 -2.2 4.0 83 172 135 234 110 241 0.47 2 4 2 2.1e+04 -9.1 10.8 119 146 251 277 154 329 0.41 3 4 1.2e-16 1.2e-12 48.2 1.3 1 153 455 594 455 610 0.66 4 4 7e-67 7.2e-63 213.6 0.2 201 377 605 788 590 790 0.89
Sequence Information
- Coding Sequence
- ATGTCCACGCTCAATGCAGagaattcaataaatacaacagcaacagcagccacaacTTCATTAGCCACAATGCCCGACAGTGCCGCTTATCAATTACCTGTGAACATGAGCACACATCCCCAAGCATCGCCAAGCGCAATAGTGCTCGGCACCGCTGAGCGCATACCCGTGCCAAAGGCGGAAGACTCCGATTCTGAAACGGAATtgacaaatattgaaaacttgAAAGTGACACATCGCGTCACCTCAACAAGTGGCAACGCGGTGGGTGTAGGTGCAGATGCTGAGGGCAGCGCACACGGCAAGAATGGGCCACGGCCTATGTCATGGGAGGGCGAGCTGTCCGAGAGCGAAACAAACGAAGCCGAGCTAATGGACACCGAGCATTCGCTGAGCAATGGCGGCGACTCAATGAGCATTGCAGTTATCAAGAGCGAAGCTACAACAACGACACCTCTTAGCGCAACAGCAGCGGACGGGCATCACTACGCAACAACGCCCACATTCAGCTCCAGTACGccagcaacaagaacaaaacaTTCCATTAAATCCGAAGTCGAACAGATATCAGTAGATATGCACAATGCTGGCATATATTCGTCGCCGCACACCAAGCTGAAGTTGGGACCGACACAAAGTGATCCGATTAACTTGAAGTATGAGCCAGCTGACATGGCGGGTGGTGTGAATTCACCGCTGTTGGCGCGCAGCAAAACCACAAACCTGCCATTGCCCGCCAATCCGAGTCCCGACTCAGCCATACATTCCGTCTATACGCACAGCTCGCCGTCGCAGTCACCGCTGACGTCACGGCACGCGCCATACACACCATCACTCAGTCGGAACAACAGCGACGCCTCCCACAGCTCTTGCTACTCATACAGCTCCGAATTTAGCCCAACGCACTCGCCCATACAGGCGCGACATGCACCGCCCGCGACGGCTGGCAGCTTATACAGCAGCTACAACGGCAGCGTGCCACAAGGCATGCTGTACCGGCCGCTAGCGGTAGACGGTGGCGCCAGCAACGCTGTGGAAGCACAAAATCTCTCCATCGAAGCGAAGTCAGCGACGCTCTTCGGCAGCGCCGGTGTGGAAAACGGGCTGCCTGCATCGCCTGCGGGCATCTCACGCCAACAGCTCATCAATTCACCCTGTCCCATTTGTGGCGACAAAATCTCCGGCTTCCATTACGGCATCTTCTCGTGTGAGTCGTGCAAGGGTTTCTTCAAGCGTACGGTCCAGAATCGAAAAAACTATGTTTGCGTGCGAGGTGGACCCTGTCCTGTGAGCATTTCAACGCGCAAAAAGTGTCCAGCATGTCGTTTCGACAAATGCCTGCAGAAAGGCATGAAATTGGAGGCCATACGGGAGGATCGTACACGCGGTGGGCGTTCCACCTACCAATGCTCATATACGCTGCCCAATACCATACTGAACCCCTTGCTCACCACGCTCCCAGCGAATAGCGTATCTACGCACAATGGCAACCGCTTCGTCGCCATCAGCAATGTGAGCACATTGCATGCGAGCACAGCGCCAATTAAAAGCGAACAATCTGGCGAGACACTGCAGGGGACGAATGGCGGTGCGCAGCAAAACAATGCACAGACTACGCGTGCGCCCGCAGTGCCAACGCTGCTGCAGGAGATCATGGATGTTGAGCACCTCTGGCAATACAATGAAGCCGAGTTGGCGCGCTTGAACCAGCCAATGCCCAGTGCCACATCATCTACATCATCTGCCTCCACATCTGCCACATCATCAAATCAAATGACCAATACACTGCTGGTCAGTTGTGGTCTGTCTTCCAATAGTGAAAACACAAATCCCGACTGGATAGCGCACCTCTGCAATGTGGCCGACCATCGGCTGTACAAAATTGTCAAGTGGTGCAAGAGCTTGCCCTTGTTCAAGCACATATCGATTGATGATCAAATACGCCTGCTCATTAATTCGTGGTGTGAGCTGCTATTGTTCTCCTGCTGTTTTCGCTCCATCTACACGCCAGGTGAAATTAAGTTGTCGCAGGGCAAAACAATTACGCTGGCGCAGGCCAAAACCAGTGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGGTCTTCAGGCCTGCATTGAACGTATGCTCAATTTGACTGATCACTTGCGCCGTTTACGCGTCGATCGCTATGAATATGTTGCCATGAAAGTTATCGTATTGCTGCAATCAGACACATCCGAGCTTCAAGAACCTGTCAAAGTCCGCGAGTGCCAAGAAAAAGCCTTACAAAGCCTACAAGCCTATACGCATGCTCATTATCCGGACACACCATCCAAGTTTGGTGAGCTGTTATTGCGTATACCTGATTTACAGAGGACCTACCAG
- Protein Sequence
- MSTLNAENSINTTATAATTSLATMPDSAAYQLPVNMSTHPQASPSAIVLGTAERIPVPKAEDSDSETELTNIENLKVTHRVTSTSGNAVGVGADAEGSAHGKNGPRPMSWEGELSESETNEAELMDTEHSLSNGGDSMSIAVIKSEATTTTPLSATAADGHHYATTPTFSSSTPATRTKHSIKSEVEQISVDMHNAGIYSSPHTKLKLGPTQSDPINLKYEPADMAGGVNSPLLARSKTTNLPLPANPSPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQARHAPPATAGSLYSSYNGSVPQGMLYRPLAVDGGASNAVEAQNLSIEAKSATLFGSAGVENGLPASPAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCPVSISTRKKCPACRFDKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPNTILNPLLTTLPANSVSTHNGNRFVAISNVSTLHASTAPIKSEQSGETLQGTNGGAQQNNAQTTRAPAVPTLLQEIMDVEHLWQYNEAELARLNQPMPSATSSTSSASTSATSSNQMTNTLLVSCGLSSNSENTNPDWIAHLCNVADHRLYKIVKWCKSLPLFKHISIDDQIRLLINSWCELLLFSCCFRSIYTPGEIKLSQGKTITLAQAKTSGXXXXXXXXXXSGLQACIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTSELQEPVKVRECQEKALQSLQAYTHAHYPDTPSKFGELLLRIPDLQRTYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00653595;
- 90% Identity
- iTF_00653595;
- 80% Identity
- iTF_00653595;