Egra020537.1
Basic Information
- Insect
- Ephydra gracilis
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_001014675.1
- Location
- JXPQ01059411.1:1-1108[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-25 1.1e-21 77.7 3.1 223 299 1 72 1 73 0.92 2 2 0.12 1.3e+03 -1.4 0.4 214 276 96 109 74 114 0.36
Sequence Information
- Coding Sequence
- GTTCGacttaagaaatttaatgagGAAAAACAACAGTTATCGGCTGAAGTGCAGCAATTGCAAGAACAATTGGATACATACAAAAATCAAGGCAAAGGTCGTGGCGGTACAACAAATGGCCCACTTAACGATGATGATTATGATGCACAAAGAGAGGCAAATAAAATCATCTCGGATTACAAATACAAACTACAAAAAGCTGAACAGGAAATTGCCAGTTTACAGGCAAGTTTAGCGCGTTCAGAAACGCAAGTAATACGCTATAAAAGCACAGCGGAAGCAGCTGAAAAGGCCGAAGCAGAGCTTAAAATAGAGCGAAGAAAGCTGCAACGTGAGGCGAACTAA
- Protein Sequence
- VRLKKFNEEKQQLSAEVQQLQEQLDTYKNQGKGRGGTTNGPLNDDDYDAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQREAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -