Eman018328.1
Basic Information
- Insect
- Ephialtes manifestator
- Gene Symbol
- -
- Assembly
- GCA_963970395.1
- Location
- OZ019972.1:13077994-13083272[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.052 9.9 8.2 0.2 3 21 8 27 6 28 0.85 2 14 0.082 15 7.6 0.0 2 20 34 52 33 53 0.94 3 14 0.87 1.7e+02 4.4 0.3 1 12 234 245 234 254 0.89 4 14 0.16 30 6.7 1.5 1 20 395 414 395 415 0.95 5 14 0.00013 0.025 16.4 0.2 2 23 421 442 420 442 0.97 6 14 3.7e-05 0.007 18.2 2.5 1 23 455 477 455 477 0.98 7 14 0.021 4 9.5 0.6 1 23 496 517 496 517 0.96 8 14 0.0006 0.11 14.3 0.1 2 23 523 544 522 544 0.95 9 14 5.9e-05 0.011 17.5 4.8 1 23 614 636 614 636 0.99 10 14 2.6e-06 0.00048 21.8 3.7 1 23 642 664 642 664 0.96 11 14 0.0003 0.056 15.3 4.1 1 23 670 692 670 692 0.97 12 14 1.8e-06 0.00034 22.3 0.8 1 23 698 720 698 720 0.98 13 14 0.00011 0.021 16.6 0.2 1 23 724 746 724 746 0.99 14 14 0.00024 0.046 15.6 0.1 1 23 754 776 754 776 0.98
Sequence Information
- Coding Sequence
- atgGGTTCTTTGAGCCTTGTGTGTCCTATGTGTTGCGGAGAGACATTTGACGACTCTCAATCATTGAAATATCATTTGCTGAGCATGACGGACAATCTTTATTGCCCCAACTGCGCTGAACGTTTTGATTCAGTTGCCGCATTGATTCGGCATCTAGATTGTTGCGGAGaaagttctgaaaaaaattgtctcatgcaaaccgaagaaaaaaaagaacaacagGACATCATTTTGgagAAGAAAAACCAAATCGATAAATTGGAACATGACTTTCTGGCGACGGTCGACGAGGATGGTATTATCATTGTCGGAGAACCACGAACTATCGAAATGGATGAACATGGGGATACTAAAGTTGCAGATAAAACGAAGATAGAGGATACTTGTGACAGTCGCGGCAGTTTGGGCAATTTGGAAACCCCTCAAGATTCCGAGAAAGAAAAAAGCAGCGGAGAAATACTGCACGGAATTGAGGTTTGCGCCGAGGATAATCGAGCACACGTAAAAGTTGAAAAAGGCGTAATTGCGATGTTGGAGGACGATACCGAAGAATTCGTAGAAGATGATGATCGGATCGATGCCGAGGACTCGGGTCCGATGGTAGGAATCGAACGATTGGATGATCAAGTTGACGAACTCGAGGATGCAGGACATCTTCGGGTGAAACAGGAGATATGCGAGgAAGAATCTGAGGCGCTGTTCAGTTGCAGTAGTTGTGGTATGAGTTTCAATAGTGTACTCGAGCATATTAAAGAGTATCACGACGGTCAAGAAGTCGTCCTCGAAATGGCGGAACAGCAGATGGAAGAATTGCCGGAAGAAGAATCATCGTGTATAACGAATATGGTGGGTGATAGCTCGAGCGGTTCAGCAAACGTTAATCGCTCCGTTGTCTCAGAAACTTCGAGTCTTCCTCCTCGTCAACGTCAAACGATGAACACTTTAAGAACCGAAGAATGCGTGGACAGCGAGGGACGACTTTACACAAGAAAAGTCGTGCAAATCGAGAGATTTTGGGATCGTGGCTCCGTTGCTGTTTCGCAATTGCAACTTCAGCAACATCAACAAGCCTCTAAGAGCGGACCGATGATTGAAAAATTTTTCTCTAACGTCGAAGGAGTCAAAGTTCGTTCGAAAAGCCCAACGAGTCGCACAAACTCTTCGAGTGTTCCTCAACGAATGTACAGATGCAACAGGTGCCTCGAACAATTTTCCAAACTCGGTGATTTTCGCATTCACGTTTGTCCCGATGGTAATAATAAATGTGATCTCTGTGATCGAGCGTTCGCGAGCGCGAAAGCTCTACAGTTACATTCGCGTATTCACGACGGCGAAAACGAACAAGGGGAAagtaacaaaaattttgtttgtccGACTTGTGGAACGCAATTTTCGTCTCACAAGAGCCTGCGACTTCACTCGAGAATGCACGCGCCTGTAAGAGCGAGACACGTCGATGCACCGGAGGGAACTGCAAATGGCAATTTCACGTGCCTTGAgtgtggtAAAACACTCTCGGAATCTTACAGAAAAGCTCACATGTCACTTCACACAGGTGATTCGGTAACCTGCTCCGTTTGTAATCGTAAATTCGATTCGTCCGATAGTCTCGCGATGCACGCTGCAGTGCATATTGAACTCAGTCAatcacagcagcaacagcagcaacaacaacaacaacaacaacagcaacaacaacaatcacaacaacaacaaattCCTCCAACTTCTCAGCAGCAGCAAGTACCGTCCACGAATCAAGGAAAAGAAGAATCGAGTAAAGCGGGACCGAATACAGGAGAAAACGCTGCAGATAGCGTTCAGGATTCGCAAAAGCCTTATCAGTGTCAGCACTGCGGAAGGAGATTCACGAGACCTCACGAAAAAGTGAAACACGAGAGAATACACACGGGAGAAAAACCACACGCTTGTGAGGTATGCGGAAAAACGTTCCGAGTCTCTTATTGTCTGACCCTTCATATGAGAACACACACTGGAGTGCGGCCGTACGCTTGTCAGCACTGCGGCAAAAGATTCAAGGCCTCGTCGGTGTACAATCATCATTTATTGACCCACGGCGAAGAGCGCGCGTATACGTGTCCATACTGTCCAAAAACTTTTAAGACAAGAGTTCAATTGGCCGGCCACAAGAACAGCCACACGAAGCCTTTCCGTTGCACAGAGTGTTCTCGTCCTTTCGCTTCGCTTTACGCCGCCCGCGCTCACATTCAGACACACAAAAAAGACAACAATTTCAAGTTTAGTTGTTACATATGCGGGGCATCGTACGGACGTGCTTTTGCACTGAAGGATCATCTCAAAGTTCACGCTGTGCAGGACGCACGCGAGGCACCGGAACCGGCACGCGAGGAAGAAGTCGCCGAAGCCGAGGATTATCTTATTAGCGAAGAGGTCGACGATTTGGAGGAACTCGAGGAAATAGAAGACGAAGAAGGGCAACTTGTGTCGGCCGCTGTTTCAGCGTCAGCACCACCTTCCTCCATACTTCTTCATCGGCAGTCCGAATGA
- Protein Sequence
- MGSLSLVCPMCCGETFDDSQSLKYHLLSMTDNLYCPNCAERFDSVAALIRHLDCCGESSEKNCLMQTEEKKEQQDIILEKKNQIDKLEHDFLATVDEDGIIIVGEPRTIEMDEHGDTKVADKTKIEDTCDSRGSLGNLETPQDSEKEKSSGEILHGIEVCAEDNRAHVKVEKGVIAMLEDDTEEFVEDDDRIDAEDSGPMVGIERLDDQVDELEDAGHLRVKQEICEEESEALFSCSSCGMSFNSVLEHIKEYHDGQEVVLEMAEQQMEELPEEESSCITNMVGDSSSGSANVNRSVVSETSSLPPRQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRGSVAVSQLQLQQHQQASKSGPMIEKFFSNVEGVKVRSKSPTSRTNSSSVPQRMYRCNRCLEQFSKLGDFRIHVCPDGNNKCDLCDRAFASAKALQLHSRIHDGENEQGESNKNFVCPTCGTQFSSHKSLRLHSRMHAPVRARHVDAPEGTANGNFTCLECGKTLSESYRKAHMSLHTGDSVTCSVCNRKFDSSDSLAMHAAVHIELSQSQQQQQQQQQQQQQQQQQSQQQQIPPTSQQQQVPSTNQGKEESSKAGPNTGENAADSVQDSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNFKFSCYICGASYGRAFALKDHLKVHAVQDAREAPEPAREEEVAEAEDYLISEEVDDLEELEEIEDEEGQLVSAAVSASAPPSSILLHRQSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01497665; iTF_00343352;
- 90% Identity
- -
- 80% Identity
- -