Eelu006280.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ephestia elutella
Gene Symbol
L
Assembly
GCA_018467065.1
Location
CM031568.1:10787631-10792170[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.6 2e+02 4.2 4.8 1 23 3 25 3 25 0.97
2 16 7.2e-07 8.8e-05 24.3 2.7 1 23 31 53 31 53 0.99
3 16 3e-05 0.0036 19.2 0.1 1 23 59 81 59 81 0.98
4 16 0.00075 0.092 14.8 0.0 2 23 97 119 96 119 0.95
5 16 4.8 5.9e+02 2.8 0.1 9 23 150 165 146 165 0.93
6 16 0.17 21 7.3 0.0 3 23 217 237 216 237 0.97
7 16 0.47 58 6.0 0.0 2 20 251 269 250 271 0.87
8 16 1.4e-05 0.0017 20.2 1.7 1 23 280 303 280 303 0.94
9 16 0.0083 1 11.5 0.1 1 23 308 331 308 331 0.95
10 16 0.024 2.9 10.0 0.2 1 23 385 409 385 410 0.93
11 16 0.00022 0.028 16.4 0.1 2 23 468 489 467 489 0.96
12 16 0.066 8.1 8.6 0.0 1 23 497 519 497 519 0.98
13 16 1.9 2.3e+02 4.0 0.7 2 23 527 548 526 549 0.93
14 16 2 2.5e+02 4.0 0.1 3 23 625 645 624 645 0.95
15 16 0.0053 0.65 12.1 0.1 1 20 653 672 653 675 0.95
16 16 4.5 5.5e+02 2.9 0.7 1 23 682 704 682 704 0.83

Sequence Information

Coding Sequence
ATGCCCTTCCGCTGCGAATTCTGCGCGCGGCTGTTCAAGCACAAGAGGTCCAGGGACCGGCACGTAAAGTTACACACCGGGGACCGCAAGTACCGCTGCGCGCACTGCCCCGCCGCCTTCTCCAGGAGCGATCACTTGAAGATTCATATGAAAACGCACGATAACCAGAAGCCGTTCCAATGCACGGTTTGTAACCGTGGATACAACACCGCAGCAGCTCTGACGTCCCACATGCAGGGCCACAAGCGCGACCGCGAGGGTCGGGAGCCCGAGCGACGTCGATCCCTGAGATGCTTGCGGTGTGGAGATGCCTTCCGTAGGCCCGACCTTTTACAGGCACATATGGCTAGTGCTCATGGAGTAGAATCAGCAGCGATGACACCACCCCGCCGTGTGGCTTCTCAACCCCCACCAACTCTTCTAGCGTGCATATACTGCACACGCGACACATTCACTACTATGGAACAATTGCAATTGCACGTTCGTGCTGCCCATTCTGCCTTGCTAAATGGAGAAACCCCACAAACCGTAGATCAACCAGCGCCTACGGACTTAAGCAGACGAGCAGCTGAAGATATACCTGTGGTTAAAAGGCCTCGGTCTGGTTCGGGAACACCACAGACAGCGTTATCACCAAGTACTCTATTATGCAATCAGTGTGGAGCAGCATTGCCAGATTTTGAAGCTTTCCGAGCTCATTTAAAAGGCCATTTAGAAGAGGGCGGGGAACTGAATCGTTCTAGTCCAACTCCATGTCTCCATTGTGGAGCGACGTTCGCCGATGCCGCGGCTTCTGAGCGTCATCTCGCATCTTACTATTTAGCAGTTTCCTGTGAATACACATGTCATAGCTGCAATCGGAACTTCTCTTCACCGGATGACTTGCAAAAACATCTCCTGGATATGCACACTCATCACCTTTACCGCTGCTCCCTGTGCAAGGAAATATTCGACTCAAAAGCAGCAATTCAGGTCCACTACGCAGTAGCCCACAGCAGTGAGAACAAAGTGTGGATGTGTCGGTCGTGCGGGGCGGGGGGCGGCGCGCTGCGTTCTGAAGCAGCCGCGGCCGCGCACGTGCGGTCGCGGCACGCCCCGCCGCGCTGCGCGTGCGGCGCTGTACTGGCCGGCAATGCACGGCCGCCCCGAGCCTTCCGCTGCCCGGTGCCAGCTTGCACCGATACCTTTGCTGTTCAGTATTTACTGGAGAGGCACATGCAAGCGCATCACGCTCTTCCACAGACTCTAAACGGTGACTTGGGCAGGGTTAAACGAGTGGAAAACAACAATACAGCCGAAGGAGCGGATGGAACTTGTTCTCCTTGCACTACTGGGGAGAATATAAATGCTGGTGTGAATGCTAGTGATGAGCGAAGACGGAAGAACGGCGTGGTCGCGTTACAGTGCGCGTACTGCGGGGAGCGTACGAGGAGTCGCGCGGAGCTGGAGGCCCATACTCGGGCGCACTCGGGCGCGGCAGCTGCCAGGCACAAGTGTCTCATATGCGATGAGGTACTGCCATCTGCTGCTGTGCTAGCCGAACATAAGCTGACGCACTGCAAGGTGGTTGCGGGAGATACATGCGCACGGTGCCGCGCGCGTCTTCCATCCGAGGAGTCGTTCTTAACTCACATGGCACGACATCATCCTGCTTTACCAGCTCCTTGCGTCATCTGCCGACAAACCCTCGCCTCGGAGGCTGAAGCACGACTCCATGCCAGATTCCACCTCCGTCCTTCAGAAGACGAACAGAGATGCGCTATATGCCTTCGAGCACTGCCTGATACAGAATCTGGCGATGGTGCACGTGCTTGCGGAGATTGCTACGCTCGCCACGCCGGTCCTAGACCTCCTCCTGTCGCTGATAATGATTGTAGACTATGTCGTAGAGCACTCGGCTCTCCCACAAGATTACAGGCCCATCTCATTGAGCACACCTTCGCTGGAATTGATACGTTCACGTGCTACTTATGCCGCGCGGTATTCACCAGTGCCGCGGGATTGCAGCGTCATCTACCAGAACATGCTGACGTACCGAGGCCATTTGACTGCGGCCGCTGCGGAATGAAGTTTTTCTTCCGCGCCGAAAGAGATAACCATGCTTTTGTTCATCTAGAGGAAGCTGAGATCGCTCAAAGAGCATTTTACGAAGCGTATGCCAGAGGGGCCGTATCTGCATGGGCAGCACTTGCGCCTCCTGATGCTCAGCAAATCACAACGCCTCCCGCAACGGTGGATGTCAAACAGGAGCCTGAAGTGAAAGAAGAAAAGAATACGGACGAGTATATTGAAGTGTCATCCCCTCCACCCCCGCCACCCGCTGCGCCCTCGCCCCTGCCCGTAGTGAAGCAGGAGAAGCCCGACGAAGACTGA
Protein Sequence
MPFRCEFCARLFKHKRSRDRHVKLHTGDRKYRCAHCPAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPERRRSLRCLRCGDAFRRPDLLQAHMASAHGVESAAMTPPRRVASQPPPTLLACIYCTRDTFTTMEQLQLHVRAAHSALLNGETPQTVDQPAPTDLSRRAAEDIPVVKRPRSGSGTPQTALSPSTLLCNQCGAALPDFEAFRAHLKGHLEEGGELNRSSPTPCLHCGATFADAAASERHLASYYLAVSCEYTCHSCNRNFSSPDDLQKHLLDMHTHHLYRCSLCKEIFDSKAAIQVHYAVAHSSENKVWMCRSCGAGGGALRSEAAAAAHVRSRHAPPRCACGAVLAGNARPPRAFRCPVPACTDTFAVQYLLERHMQAHHALPQTLNGDLGRVKRVENNNTAEGADGTCSPCTTGENINAGVNASDERRRKNGVVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRARLPSEESFLTHMARHHPALPAPCVICRQTLASEAEARLHARFHLRPSEDEQRCAICLRALPDTESGDGARACGDCYARHAGPRPPPVADNDCRLCRRALGSPTRLQAHLIEHTFAGIDTFTCYLCRAVFTSAAGLQRHLPEHADVPRPFDCGRCGMKFFFRAERDNHAFVHLEEAEIAQRAFYEAYARGAVSAWAALAPPDAQQITTPPATVDVKQEPEVKEEKNTDEYIEVSSPPPPPPAAPSPLPVVKQEKPDED*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01437318;
90% Identity
iTF_00013338;
80% Identity
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