Basic Information

Insect: Acrobasis repandana
Gene Symbol: L
Assembly: GCA_963576875.1
Location: OY756215.1:11816371-11822021[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.5 1.3e+02 4.2 4.8 1 23 3 25 3 25 0.97

2 17 6.5e-07 5.7e-05 24.3 2.7 1 23 31 53 31 53 0.99

3 17 2.7e-05 0.0023 19.2 0.1 1 23 59 81 59 81 0.98

4 17 0.00068 0.059 14.8 0.0 2 23 97 119 96 119 0.95

5 17 4.3 3.8e+02 2.8 0.1 9 23 150 165 146 165 0.93

6 17 0.16 14 7.3 0.0 3 23 216 236 215 236 0.97

7 17 0.43 37 6.0 0.0 2 20 250 268 249 270 0.87

8 17 3.3e-06 0.00029 22.0 1.6 1 23 279 302 279 302 0.94

9 17 0.021 1.8 10.1 0.1 1 23 307 330 307 330 0.93

10 17 0.00045 0.04 15.3 0.2 1 23 384 408 384 409 0.95

11 17 0.0002 0.018 16.4 0.1 2 23 467 488 466 488 0.96

12 17 0.059 5.2 8.6 0.0 1 23 496 518 496 518 0.98

13 17 1.7 1.5e+02 4.0 0.7 2 23 526 547 525 548 0.93

14 17 9.8 8.6e+02 1.7 0.0 3 23 555 575 554 575 0.93

15 17 1.8 1.6e+02 4.0 0.1 3 23 624 644 623 644 0.95

16 17 0.0077 0.67 11.4 0.1 1 20 652 671 652 674 0.95

17 17 4 3.5e+02 2.9 0.7 1 23 681 703 681 703 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.5	1.3e+02	4.2	4.8	1	23	3	25	3	25	0.97
2	17	6.5e-07	5.7e-05	24.3	2.7	1	23	31	53	31	53	0.99
3	17	2.7e-05	0.0023	19.2	0.1	1	23	59	81	59	81	0.98
4	17	0.00068	0.059	14.8	0.0	2	23	97	119	96	119	0.95
5	17	4.3	3.8e+02	2.8	0.1	9	23	150	165	146	165	0.93
6	17	0.16	14	7.3	0.0	3	23	216	236	215	236	0.97
7	17	0.43	37	6.0	0.0	2	20	250	268	249	270	0.87
8	17	3.3e-06	0.00029	22.0	1.6	1	23	279	302	279	302	0.94
9	17	0.021	1.8	10.1	0.1	1	23	307	330	307	330	0.93
10	17	0.00045	0.04	15.3	0.2	1	23	384	408	384	409	0.95
11	17	0.0002	0.018	16.4	0.1	2	23	467	488	466	488	0.96
12	17	0.059	5.2	8.6	0.0	1	23	496	518	496	518	0.98
13	17	1.7	1.5e+02	4.0	0.7	2	23	526	547	525	548	0.93
14	17	9.8	8.6e+02	1.7	0.0	3	23	555	575	554	575	0.93
15	17	1.8	1.6e+02	4.0	0.1	3	23	624	644	623	644	0.95
16	17	0.0077	0.67	11.4	0.1	1	20	652	671	652	674	0.95
17	17	4	3.5e+02	2.9	0.7	1	23	681	703	681	703	0.83

Sequence Information

Coding Sequence: ATGCCCTTCCGCTGCGAGTTCTGCGCGAGGCTGTTCAAGCACAAGCGCTCCCGCGACCGCCACGTCAAGTTACACACCGGCGACAGAAAGTACCGCTGTGCACACTGCCCTGCGGCTTTCTCCAGAAGCGATCATTTGAAGATTCACATGAAGACGCACGATAATCAGAAGCCGTTCCAATGCACCGTGTGCAACCGTGGCTACAACACTGCAGCGGCCCTGACTTCCCACATGCAGGGCCACAAGCGCGACCGTGAGGGCCGCGAGCCTGACCGTCGACGAGCTCTAAGATGCTTACGGTGCGGGGATGCTTTTCGCAGACCTGACCTTTTACAGGCTCATATGGCAAGTGCTCATGGAGTAGAGACTGCAGCGATGACTCCACCTCGTCGTGTAGCCTCTCAACCTCCGCCAACGCTTCTAGCGTGCATTTACTGCACGCGAGACACATTTACAACTATGGAACAATTACAATTGCACGTGCGAGCAGCCCATTCCGCGTTGCTGAACGGGGAAACACAGACTGTAGACCAACCGGCGCCCACAGATCTAAGTAGACGAGCAGTAGATGACATGCCCGCTGTCAAGAGGCCTCGCTCGGGCTCAGGAACACCACAGACTGCATTATCGCCAAGTACTCTACTATGCAATCAATGTGGAGCCGCATTGCCAGATTTTGAAGCATTCCGAGCTCATTTGAAAGGCCATTTGGAAGAAGGCGGAGAACTTAATCGTTCCAGTCCCACTCCTTGTCTGCATTGTGGTGCTACTTTCGCGGACGCTGCAGCTTCAGAGCGACATCTAGCGTCGTACTATCTTGCTGTCTCCTGTGAATACACTTGTCACAGTTGCAATAGAAGCTTCTCCTCGCCTGACGACTTGCAAAAACATCTTTTGGATATGCATTCTCATCATCTCTACCGTTGCTCTCTTTGCAAGGAAATCTTCGATTCTAAGGCAGCAATACAGGTCCACTTCGCAGTAGCCCACAGCGGAGAGAACAAAGTGTGGGTGTGTCGTTCCTGTGGGGCCGGTGGTGGTGCGCTGAGGACCGAGGCTGCCGCCGCGGCGCACGTTCGGTCCCGGCACGCCCCGCCGCGCTGTGCCTGCGGAGCGGTCCTGGCAGGCAACGCTAGACCGCCGAGGGCTTACCGCTGCCCGGTGCCGGCTTGTACGGAAACCTTTGCAGTGCAGTATTTGCTTGAAAGGCATATGCAAGCACATCATGCTCTACCACAGGCACTAAATGGTGACATGGGTCGAGTAAAGCGAACAGAAAACAACAATTCTACCGAAGGAGCGGAAGGGGCCTGTTCTCCGTGCACTACGGGGGAGAATATAAGCGTTGGTGTCGCTGCTGGCGACGAAAGAAGACGGAAGAATGGGGTGGTGGCATTACAATGCGCCTATTGTGGGGAGCGCACTCGAAGCCGTGCGGAGTTGGAGGCGCACACTAGAGCGCACTCGGGCGCGGCGGCTGCGAGGCACAAGTGTCTAATATGCGATGAGGTCTTGCCATCCGCTGCTGTATTGGCAGAGCACAAGCTGACGCACTGCAAGgtaGTGGCGGGTGATACGTGCGCGCGCTGCCGGGCGCGTCTTCCATCCGAGGAGTCATTCCTTACGCACATGGCGCGCCATCACCCTGCCCTGCCCGCCCCATGCGTCATTTGTCGACAGACCCTCGCTTCGGAAGCCGAAGCACGTCTCCATGCTCGATTTCATCTCCGCCCTACAGAAGACGAACAAAGATGCGCGATATGCCTGCGGTCACTACCTGAGACAGAAGCTGGCGATGGTGCGCGCGCCTGCGCAGACTGCTATGCTCGGCACGCTGCCCCTAGACCGCCTCCTCCTGCTGATAATGACTGCAGACTCTGCCGTCGAGCACTTGGTTCCCCCACCAGACTGCAGGCTCACTTAATTGAACATACCTTTGCGGGAATCGATACATTTACTTGCTACTTATGCCGGGCGGTGTTCACCAGTGCTGTTGGCTTACAGCGTCATTTACCTGAGCATGCCGATGTACCAAGGCCATTTGACTGCGGCCGCTGCGGAATGAAGTTTTTCTTCCGCGCTGAGAGGGATAATCACGCGTTTGTGCATCTTGAGGAAGCTGAGATTGCTCAAAGGGCCTTTTATGAGGCGTACGCTAGAGGAGCCGCGTCTGCGTGGGCAGCGCTGGTGCCGCCAGATGCGCAGCAAATCACGCCGACGTCGACGGTGGACATAAAGCAGGAGCCAGAGGTGAAAGAAGAGCGAAATACCGATGAATATATTGAAGTATCGTCCCCTCCCCCTCCGGCCCCGCCGCCACCCGCTGCGCCCTCACCTCCCCCCGTGGTAAAGCAGGAGAAGCCCGACGAAGACTGA
Protein Sequence: MPFRCEFCARLFKHKRSRDRHVKLHTGDRKYRCAHCPAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGDAFRRPDLLQAHMASAHGVETAAMTPPRRVASQPPPTLLACIYCTRDTFTTMEQLQLHVRAAHSALLNGETQTVDQPAPTDLSRRAVDDMPAVKRPRSGSGTPQTALSPSTLLCNQCGAALPDFEAFRAHLKGHLEEGGELNRSSPTPCLHCGATFADAAASERHLASYYLAVSCEYTCHSCNRSFSSPDDLQKHLLDMHSHHLYRCSLCKEIFDSKAAIQVHFAVAHSGENKVWVCRSCGAGGGALRTEAAAAAHVRSRHAPPRCACGAVLAGNARPPRAYRCPVPACTETFAVQYLLERHMQAHHALPQALNGDMGRVKRTENNNSTEGAEGACSPCTTGENISVGVAAGDERRRKNGVVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRARLPSEESFLTHMARHHPALPAPCVICRQTLASEAEARLHARFHLRPTEDEQRCAICLRSLPETEAGDGARACADCYARHAAPRPPPPADNDCRLCRRALGSPTRLQAHLIEHTFAGIDTFTCYLCRAVFTSAVGLQRHLPEHADVPRPFDCGRCGMKFFFRAERDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALVPPDAQQITPTSTVDIKQEPEVKEERNTDEYIEVSSPPPPAPPPPAAPSPPPVVKQEKPDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01437318;
90% Identity: iTF_00012260; iTF_00720600; iTF_00652003; iTF_00146666; iTF_00640715; iTF_01302623; iTF_00833348; iTF_00648391; iTF_00073077; iTF_01220853;
80% Identity: -