Edan011633.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- bab1
- Assembly
- GCA_000507165.2
- Location
- KZ497769.1:644247-674652[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.3e-15 1e-11 44.4 0.1 3 45 370 412 368 412 0.92
Sequence Information
- Coding Sequence
- ATGGGGAGCGCTTCACAACAGTACTGTCTGCGATGGAACAACCATCGCACCAACCTTCTCACTGTGTTCGACCAGCTCCTGCAGAATGAAGCCTTCACAGACGTCACCCTGGCGTGTGATGGAGCGACCATCAAAGGTCACAAGATGGTGCTCGCAGCTTGTTCCACCTACTTCCAGACCCTGTTTCTGGAAGTCTCCTGCTCCCACCCTGTCGTGGTGCTCAAGGACATTCGCTACACCGATATGAAGGCCATCCTTGAGTACATGTACAGGGGGGAGGTCAACGTAGCCCAGGATCAGTTGGCCAGTTTACTAAAGGTCGCAGAGGCCTTAAAGGTCAAGGGTCTGGTGGAGGAAAATGGTCAGTCTGCATCGCCACCAACAGGAAACGGGACCACTGCTCCCCCACCTTGTCCTCCATCCCCACCCACCATCAGTACCTCTGGAAACGTCTCCTCTCTACCTCCAAACATGTCACCACCTCACTCGGCAGGCCTTCTCAACCCTTTCTCCAAGAACTACATGTACAACAAATCTGTCATGCTTGGTGGGGCGGCCGCAGCTGCGGCAGCGGAGAGGGCTCGTCTAGGCTCCATGGCTATGTGGGCCATGCCGGGGTTACCCCCTGGTTTACCACCCCTCCCTCCACACTCACTAAGTAGTACCTATGACACCAGAGACCTCTCCCCCCTTAAGAGGAAGAAACTGTCGAGTTTGTTGAGTTGTCGTGACACACCCATTCTGAGGACTGTACTGGGACAGAGTCTGGGCCAACCTCCGTCAGGTAGCAGTTCTGTCTCTCCCCCGGGCAGCAGTCACTCGCCGGCAGCCGACTCTTCCCAACAGCCTGTCGCCCTAGTGTGCCATCAGGAACGAGCCCAGTCGAATGGTTCTGCACACAGTCTCATGAAGGGAATGAAAGGAGAACCTTGCGAAGACGACCATCCAGGATACGGTGACGTTAGTGCTGCAGATGATGACGAACATtcgaATAAAGTGATGCTACCTGGTTCTACACATCCCAGTTACTCGGCAGatttaaaagGAATTGCAACTTACGTCCCCCAACAGAAACCTGAGTGGAAACGCTACAAGCAGTACACACGGAACGACATCATGTCCGCGATCGATGCAGTCCGCAATGGCATGAGTGCTCTACAGGCTGCTCGCAAGTACGGAGTACCCTCAAGGACCCTCTACGATAAGGTAAAGAAGTTAGGCATAACTACAAGCCGTCCATTCAAACGAGGAAGCTTTCCATTTGGTCTCGGCGGGAACAGCAATGAAGCGATGCATTCAGGACTCAATCATTCAGGAAGTTTCTGTAGCCAGTCAGAAGGGGAGGAACAAGCCTCGTCTGATCTACACTCACACAAGTCTGACGACAGAGACGAGGGTACACCTGCTAGTGTCTTAGTCCGAGCGAGTCCTTGTCGAACACCGCCCAGTCCTGGGACGTTACTAGCAGCTCAGGGTCACTTCCTGAGCGAGGACAGGCATGCAAGGCATTATCATCGCAGTAGCAGTAGTCCTAGCCCGACAGCAAGCAGTAGCCACAGTCACGATGAAGTGGAAGATCTCTCGGTAGCTAGGAAACCTATCGCACCACCATCGCCCCCGACTCCCATGGCCATGCCACTGACCCCTCTCCACCCCCACATTGTGTCCTTAAAAGACGAGCATAGGGCACCTGCTGTCTTGGATGAGGGTGGAGTAAGGGCGACGGCTGTGGGAGTGGGTGGAGGTGACCCGGAGCGGGACTGA
- Protein Sequence
- MGSASQQYCLRWNNHRTNLLTVFDQLLQNEAFTDVTLACDGATIKGHKMVLAACSTYFQTLFLEVSCSHPVVVLKDIRYTDMKAILEYMYRGEVNVAQDQLASLLKVAEALKVKGLVEENGQSASPPTGNGTTAPPPCPPSPPTISTSGNVSSLPPNMSPPHSAGLLNPFSKNYMYNKSVMLGGAAAAAAAERARLGSMAMWAMPGLPPGLPPLPPHSLSSTYDTRDLSPLKRKKLSSLLSCRDTPILRTVLGQSLGQPPSGSSSVSPPGSSHSPAADSSQQPVALVCHQERAQSNGSAHSLMKGMKGEPCEDDHPGYGDVSAADDDEHSNKVMLPGSTHPSYSADLKGIATYVPQQKPEWKRYKQYTRNDIMSAIDAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSFPFGLGGNSNEAMHSGLNHSGSFCSQSEGEEQASSDLHSHKSDDRDEGTPASVLVRASPCRTPPSPGTLLAAQGHFLSEDRHARHYHRSSSSPSPTASSSHSHDEVEDLSVARKPIAPPSPPTPMAMPLTPLHPHIVSLKDEHRAPAVLDEGGVRATAVGVGGGDPERD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00630428;
- 90% Identity
- iTF_00651029;
- 80% Identity
- iTF_00651029;