Basic Information

Gene Symbol
-
Assembly
GCA_905220475.1
Location
HG992033.1:10778288-10794116[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 1.5e-05 0.0014 19.6 2.2 1 23 11 33 11 33 0.97
2 20 0.0015 0.14 13.4 0.9 1 20 39 58 39 61 0.94
3 20 3.7e-06 0.00035 21.6 3.3 1 23 80 102 80 102 0.98
4 20 5.3e-05 0.005 17.9 4.1 1 23 108 130 108 130 0.99
5 20 2.7e-05 0.0025 18.8 5.1 1 23 136 158 136 158 0.96
6 20 6.4e-06 0.0006 20.8 6.4 1 23 164 186 164 186 0.98
7 20 9.8e-07 9.3e-05 23.4 2.7 1 23 192 214 192 214 0.97
8 20 5.6e-05 0.0052 17.9 6.7 1 23 220 242 220 242 0.97
9 20 1.1e-05 0.001 20.1 6.4 1 23 248 270 248 270 0.98
10 20 2.7e-07 2.5e-05 25.2 1.9 1 23 276 298 276 298 0.98
11 20 2.7e-05 0.0026 18.8 7.9 1 23 304 326 304 326 0.98
12 20 1.4e-05 0.0013 19.8 6.6 1 23 332 354 332 354 0.98
13 20 3.4e-06 0.00032 21.7 5.4 1 23 360 382 360 382 0.98
14 20 6.2e-06 0.00058 20.9 6.2 1 23 388 410 388 410 0.97
15 20 1.2e-06 0.00012 23.1 4.5 1 23 416 438 416 438 0.98
16 20 1.9e-07 1.8e-05 25.6 4.1 1 23 444 466 444 466 0.99
17 20 3.1e-05 0.0029 18.7 6.9 1 23 472 494 472 494 0.97
18 20 7.9e-07 7.5e-05 23.7 5.3 1 23 500 522 500 522 0.98
19 20 0.00018 0.017 16.2 0.3 1 23 529 551 529 551 0.97
20 20 0.015 1.4 10.2 5.4 1 23 561 583 561 583 0.99

Sequence Information

Coding Sequence
ATGTCGGAAGCGGAATCGTCACCTGGACACCATTCATGTGATATATGTGGGAAAGTGTTCCAGTTTAGATATCAACTAATTGTTCACAGACGGTATCACGGCGAGAACAAGCCTTACTCGTGCCAAGTTTGCGGTTCTACCTTCGCCAATCCCGTGGAGTTGTCGCGTCACGGGAAATGCCATCTTGCCGGTGACCCAGCTGAAAGGCACGCCAAGAGGATGGCCCAAGATAAACCGTACGCGTGCAACACTTGCCAAAAAACGTTCTCGCGTAAAGAACATTTGGACAACCATGTTCGAAGTCACACCGGGGAAACGCCATACAGATGCGAGTTCTGCGCCAAAACATTCACTCGCAAGGAACACATGGTGAATCACGTGAGGAAACACACGGGCGAGACTCCGCACCGGTGTGACATCTGTAAGAAGAGCTTCACTAGGAAAGAGCACTTTATGAACCACGTCTTGTGGCATACAGGTGAAACGCCTCACCAATGCTTAACGTGCGGCAAGAAGTACACTAGAAAGGAGCATTTATCGAACCATATGAGGTCGCATACCAACGATACGCCATTCAGATGTGAACTTTGTGGCAAATCATTCACCAGAAAGGAACATTTCTCCAATCACATTTTGTGGCACACTGGCGAAACACCACACCGTTGCGATTTCTGTTCAAAAACTTTCACTCGTAAGGAACACTTGTTGAACCATGTGAGACAGCACACGGGGGAGTCTCCGCACCGCTGCAACTACTGCTCGAAATCGTTCACGAGGCGCGAGCACCTCGTGAACCACGTGCGTCAACATACGGGAGAAACGCCCTTCCAATGTGGATACTGCCCTAAGGCGTTCACGAGGAAGGACCATTTAGTGAACCACGTCCGTCAACACACGGGGGAATCCCCCCACAAGTGTTCGTTTTGCACCAAATCGTTCACTCGCAAGGAACACCTTACGAACCACGTGAGGCAACACACCGGGGAGTCTCCGCATCGGTGCACTTACTGCGCCAAGTCGTTCACTAGGAAGGAACATCTCACCAACCATGTTCGGCAGCACACTGGTGAAACTCCACACAAGTGCACGTATTGCCCGCGCGCTTTCTCGCGGAAGGAACATCTGACCACCCACGTGAGGCAGCATACAGGAGTCGCGCCGCACTCCTGCTCCTATTGCAATAAAACATTCACGAGGAAGGAGCATTTGGTCAACCATGTTCGGCAACACACGGGCGAAACTCCATTCAAGTGCACGTACTGTTCGAAGTCGTTCTCCCGAAAGGAGCATCTCTCAAACCATGTCAACATTCACACTGGGGAAACGCCGTACAAATGTCCCTTCTGCACTAAGACCTTCTCAAGGAAAGAGCATCTCACCAATCATGTCAGGATTCACACCGGTGAGTCGCCTCATCGCTGCGACTTCTGCCAAAAGACGTTCACGCGCAAGGAGCACCTCATCAACCATCTGAAACAGCACACTGGAGACTCTGCACATACTTGCAAGGTGTGCCAGAAACCTTTCACGAGAAAGGAGCACCTGATTACACATATGAGATCTCACAGCTGCGGCGAGCGGCCGTACAGTTGCGGGGAGTGCGGTAAATCGTTCCCTCTCAAAGGCAATCTCATGTTCCACGAACGGTCGCATCAGAAGGCAGGCGGCGGCGCGCGCCCCTTCCGCTGTGACGTATGCTCTAAGGACTTTATGTGCAAAGGGCACCTGATCTCGCACCGCCGCACGCACGCGGACGCGGGCGCGGCGCCGACGGAGCCTCGCACGGAGCCAGAAGTCGACTGCAGCGCTAAATGCGTCAAGGTTGAGGACGATCCTCTAGCGCTTGAGAACAAACCCAAGGTGGAAGAAGTGAGACCGGCTGAAAGCATTATCCTCCCACAGACCTCGCCAAACAATTCTACTGTGATGCAGATTACCAGCAACCAGCAAGTCCGCGCTCCAACGTCGACTGCAAGCGGCATAGCATCCACGTTCACGCACACGGTGACGTCACAGCATCACGCCGGCGCCGCCATTGCTCACCACCCTGTCAGCGTCACATACTAG
Protein Sequence
MSEAESSPGHHSCDICGKVFQFRYQLIVHRRYHGENKPYSCQVCGSTFANPVELSRHGKCHLAGDPAERHAKRMAQDKPYACNTCQKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVLWHTGETPHQCLTCGKKYTRKEHLSNHMRSHTNDTPFRCELCGKSFTRKEHFSNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLTTHVRQHTGVAPHSCSYCNKTFTRKEHLVNHVRQHTGETPFKCTYCSKSFSRKEHLSNHVNIHTGETPYKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLINHLKQHTGDSAHTCKVCQKPFTRKEHLITHMRSHSCGERPYSCGECGKSFPLKGNLMFHERSHQKAGGGARPFRCDVCSKDFMCKGHLISHRRTHADAGAAPTEPRTEPEVDCSAKCVKVEDDPLALENKPKVEEVRPAESIILPQTSPNNSTVMQITSNQQVRAPTSTASGIASTFTHTVTSQHHAGAAIAHHPVSVTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00650214;
90% Identity
iTF_00650214;
80% Identity
iTF_00650214;