Basic Information

Gene Symbol
-
Assembly
GCA_905220475.1
Location
HG992033.1:10778288-10794116[+]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.54 1.1e+03 0.5 0.1 19 26 13 20 7 24 0.87
2 18 5 1e+04 -2.6 0.0 19 28 41 50 37 56 0.84
3 18 0.0077 15 6.4 1.2 14 30 77 94 66 103 0.74
4 18 0.0049 9.7 7.0 2.3 6 38 98 130 94 131 0.75
5 18 0.015 29 5.5 2.7 5 33 125 149 123 162 0.82
6 18 0.0018 3.5 8.4 5.4 15 38 162 186 151 189 0.84
7 18 0.0098 19 6.0 1.2 14 31 189 206 184 215 0.76
8 18 0.01 20 6.0 2.5 6 33 206 237 204 243 0.71
9 18 0.0051 10 7.0 4.4 5 38 237 270 233 271 0.78
10 18 0.00062 1.2 9.9 0.5 5 38 265 298 263 299 0.83
11 18 0.052 1e+02 3.7 5.6 13 38 300 326 293 332 0.80
12 18 0.018 35 5.2 5.7 13 38 328 354 321 360 0.81
13 18 0.0017 3.3 8.5 2.9 6 38 350 382 349 383 0.86
14 18 0.0027 5.3 7.8 1.9 19 38 390 410 388 411 0.85
15 18 0.0023 4.6 8.0 2.8 5 30 405 430 403 439 0.78
16 18 0.0019 3.8 8.3 1.6 6 33 434 461 431 467 0.78
17 18 0.00091 1.8 9.3 4.0 6 38 462 494 461 500 0.82
18 18 0.0022 4.4 8.1 1.4 17 38 500 522 495 522 0.88

Sequence Information

Coding Sequence
ATGTCGGAAGCGGAATCGTCACCTGGACACCATTCATGTGATATATGTGGGAAAGTGTTCCAGTTTAGATATCAACTAATTGTTCACAGACGGTATCACGGCGAGAACAAGCCTTACTCGTGCCAAGTTTGCGGTTCTACCTTCGCCAATCCCGTGGAGTTGTCGCGTCACGGGAAATGCCATCTTGCCGGTGACCCAGCTGAAAGGCACGCCAAGAGGATGGCCCAAGATAAACCGTACGCGTGCAACACTTGCCAAAAAACGTTCTCGCGTAAAGAACATTTGGACAACCATGTTCGAAGTCACACCGGGGAAACGCCATACAGATGCGAGTTCTGCGCCAAAACATTCACTCGCAAGGAACACATGGTGAATCACGTGAGGAAACACACGGGCGAGACTCCGCACCGGTGTGACATCTGTAAGAAGAGCTTCACTAGGAAAGAGCACTTTATGAACCACGTCTTGTGGCATACAGGTGAAACGCCTCACCAATGCTTAACGTGCGGCAAGAAGTACACTAGAAAGGAGCATTTATCGAACCATATGAGGTCGCATACCAACGATACGCCATTCAGATGTGAACTTTGTGGCAAATCATTCACCAGAAAGGAACATTTCTCCAATCACATTTTGTGGCACACTGGCGAAACACCACACCGTTGCGATTTCTGTTCAAAAACTTTCACTCGTAAGGAACACTTGTTGAACCATGTGAGACAGCACACGGGGGAGTCTCCGCACCGCTGCAACTACTGCTCGAAATCGTTCACGAGGCGCGAGCACCTCGTGAACCACGTGCGTCAACATACGGGAGAAACGCCCTTCCAATGTGGATACTGCCCTAAGGCGTTCACGAGGAAGGACCATTTAGTGAACCACGTCCGTCAACACACGGGGGAATCCCCCCACAAGTGTTCGTTTTGCACCAAATCGTTCACTCGCAAGGAACACCTTACGAACCACGTGAGGCAACACACCGGGGAGTCTCCGCATCGGTGCACTTACTGCGCCAAGTCGTTCACTAGGAAGGAACATCTCACCAACCATGTTCGGCAGCACACTGGTGAAACTCCACACAAGTGCACGTATTGCCCGCGCGCTTTCTCGCGGAAGGAACATCTGACCACCCACGTGAGGCAGCATACAGGAGTCGCGCCGCACTCCTGCTCCTATTGCAATAAAACATTCACGAGGAAGGAGCATTTGGTCAACCATGTTCGGCAACACACGGGCGAAACTCCATTCAAGTGCACGTACTGTTCGAAGTCGTTCTCCCGAAAGGAGCATCTCTCAAACCATGTCAACATTCACACTGGGGAAACGCCGTACAAATGTCCCTTCTGCACTAAGACCTTCTCAAGGAAAGAGCATCTCACCAATCATGTCAGGATTCACACCGGTGAGTCGCCTCATCGCTGCGACTTCTGCCAAAAGACGTTCACGCGCAAGGAGCACCTCATCAACCATCTGAAACAGCACACTGGAGACTCTGCACATACTTGCAAGGTGTGCCAGAAACCTTTCACGAGAAAGGAGCACCTGATTACACATATGAGATCTCACAGCTGCGGCGAGCGGCCGTACAGTTGCGGGGAGTGCGGTAAATCGTTCCCTCTCAAAGGCAATCTCATGTTCCACGAACGGTCGCATCAGAAGGCAGGCGGCGGCGCGCGCCCCTTCCGCTGTGACGTATGCTCTAAGGACTTTATGTGCAAAGGGCACCTGATCTCGCACCGCCGCACGCACGCGGACGCGGGCGCGGCGCCGACGGAGCCTCGCACGGAGCCAGAAGTCGACTGCAGCGCTAAATGCGTCAAGGTTGAGGACGATCCTCTAGCGCTTGAGAACAAACCCAAGGTGGAAGAAGTGAGACCGGCTGAAAGCATTATCCTCCCACAGACCTCGCCAAACAATTCTACTGTGATGCAGATTACCAGCAACCAGCAAGTCCGCGCTCCAACGTCGACTGCAAGCGGCATAGCATCCACGTTCACGCACACGGTGACGTCACAGCATCACGCCGGCGCCGCCATTGCTCACCACCCTGTCAGCGTCACATACTAG
Protein Sequence
MSEAESSPGHHSCDICGKVFQFRYQLIVHRRYHGENKPYSCQVCGSTFANPVELSRHGKCHLAGDPAERHAKRMAQDKPYACNTCQKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVLWHTGETPHQCLTCGKKYTRKEHLSNHMRSHTNDTPFRCELCGKSFTRKEHFSNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLTTHVRQHTGVAPHSCSYCNKTFTRKEHLVNHVRQHTGETPFKCTYCSKSFSRKEHLSNHVNIHTGETPYKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLINHLKQHTGDSAHTCKVCQKPFTRKEHLITHMRSHSCGERPYSCGECGKSFPLKGNLMFHERSHQKAGGGARPFRCDVCSKDFMCKGHLISHRRTHADAGAAPTEPRTEPEVDCSAKCVKVEDDPLALENKPKVEEVRPAESIILPQTSPNNSTVMQITSNQQVRAPTSTASGIASTFTHTVTSQHHAGAAIAHHPVSVTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00650223;
90% Identity
iTF_00650223;
80% Identity
iTF_00650223;