Basic Information

Gene Symbol
Hr39
Assembly
GCA_905220475.1
Location
HG992026.1:3608352-3622261[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.21 3.1e+03 -2.1 0.7 114 181 80 157 20 212 0.48
2 5 2 3e+04 -8.6 11.2 115 181 269 330 67 367 0.65
3 5 9.9e-08 0.0015 18.8 0.1 1 19 445 463 445 471 0.92
4 5 0.022 3.3e+02 1.1 0.0 80 117 494 529 465 552 0.71
5 5 3.7e-65 5.5e-61 207.9 0.0 166 408 509 764 491 764 0.84

Sequence Information

Coding Sequence
ATGAATGCTGCTATGTCCAGCGAAGGAGATGCGGTGAAGGTGGAAGGCGGACATGTCTCGGTGACCACCATCAGCATGTCAGGGTGTCCGGAAACCAGTAACGGGCAGTTCTCGTACAGCTCGAGCGGAGTCCGCATCAGCGTGTCTTCAGAGCCACATGATGAGGACTCGACTGATGCGGAGATTTCCAAAATCGACTTCACGCAGCATCAGTACGAGGTCAACATGCGGAATAATAAGAAACGCTCATACAGTGGTGCCCAGTACGAAACGCAGACGAACGACCGCGAGCGACCGATGTCGTGGGAAGGAGAGCTGTCCGACTCTGAAATGGTTATCGACACCAGCGTTAATAATGATGAAAATAGCAACTCCCTAGACCTGCAATCGTCCCGAGACTCCATCGACACTCTTCGCAATGTGACCATAAAGACAGAGCCGCTAAAAAACGAAGTTTTCCAGAGCTTGGATGATCAGAGGGTACTGGATCTGAAGTATACGGCCCCTTTACAGTCGCATCAAAGAAGCCTTAGTATGAACAGGATACCAGTACTTACAGACAATGCATCTCTCTCTCTCCTCCGAAGACCATCATCACCGACAAGCAGTGCGAAATCCTTGGCTCTCTCCGACCAGGGATCAGCTCCTATCATGGCGCAGACATCCATCGGGGAGGTCCAGAACTTGACCATTAAGAAGGAGACTTTGTCAGAGTTGAAATGCGAGCCGTCAGTGGGCATGGAGAAGCTGCTGGGTGCACTCCACGGGTCGCCGTTACTCGGCCGACTGCCGCGCGTCCAATCCAGTGCCAGCACTGACTCGGCCGTGCATTCCATGTACACACACAGTGTATACAGCAGTCCTTCAGCCAGTCCGCGCGCCTCCCGCCACTTCACGCCGTCTCTCTCGCGCAACAATAGCGACGCTTCACACAGCTCGTGCTACTCTTACAGCTCGGAGTTCTCACCCACACATTCCCCAGTTCAGTCACGTCATGGTCACGTGGTGTACCGCGAGGCGGCCAGCGTTCTCCCCGCGACATCACCAGCTCACGACGAGGACGCGGAAGACGACCGTCTGCATCATCACCAGGGGATCAGCAGACAGCAGCTTATTAACAGTCCATGTCCGATATGCGGCGACAAAATCAGCGGGTTTCACTACGGTATATTCTCCTGCGAATCTTGCAAAGGTTTCTTCAAGCGGACTGTCCAAAACAGAAAGAATTACATGTGCTTGAGAGGTGGGAACTGTCCGGTTACTGTAGCGACGAGGAAAAAGTGTCCCGCTTGCCGGTTCGACAAGTGTCTCGGATGTGGGATGAAGTTAGAAGCAATTCGAGAAGACAGGACAAGAGGTGGAAGATCAACATATCAATGTTCGTACCCACTATCTGGCGCATCATCGACGGGCTCGCTTCTATCTGCACACGTACCTGCCACGTTACGGCACGCCTCCAGTCTCACTTGTGTAAACGGTCCAGGGTCATACAACAGCAGAGGGGAATCCAGTAATAGTCGACTCACGCCTGACATACCGCCGTTATTGCAAGAAATAATGGACGTGGAACACCTATGGCAATACAACGAGTCCGAATTAAACCGCATTGGCAAGTCAACTGGAGGAAGCCCCTCTGCCAACCCCCTTCTTGCCGCCAGTGGAATCACGGCGCAGAACTCCAGTCCAGACTTCTTAGCCGACCTTTGCAATATCGCCGACCATCGACTGTACAAAATCGTCAAATGGTGCAAAAGTCTGCCACTCTTTAAAAATATCTCTATAGATGACCAGATCTGCCTGCTGATTAACAGCTGGTGCGAGCTACTAGTGTTGTCTTGCTGCTACCGTGGCGTTAGTACTCCGGGAGAGGTGCGAGTGGGTGGTGGCAGAGGAATCACGTTGCAACAGAGTGCCAAGTTAGGCTTGACGCCGTGTATAGAGCGAATGCTGAGTTTCACCGATCACTTGCGGCGGCTGCGAGTGGACCGATACGAGTACGTGGCGTTGAAGGTCATCGTACTACTCACGTCAGATGCACCTGAGTTGCGTGAAGCTGAAAAAGTGAGAGCGTCTCAAGAGAAAGCATTGGCAGCACTTCAAGCTTACATTGCGACGCACTCACCGCAAACTCCTGCCAAATTCGGAGAACTATTGCTGCGTATACCCGAATTACAGCGGACTTGTCAGTTCTTTATGCAAGTCGGCAAAGAAATGCTAAATCCTGCAAACAAAAACAAAGATGGTGATGGACCCAGCTTCAACCTTTTGATGGAACTGCTAAGAGGAGACCATTGA
Protein Sequence
MNAAMSSEGDAVKVEGGHVSVTTISMSGCPETSNGQFSYSSSGVRISVSSEPHDEDSTDAEISKIDFTQHQYEVNMRNNKKRSYSGAQYETQTNDRERPMSWEGELSDSEMVIDTSVNNDENSNSLDLQSSRDSIDTLRNVTIKTEPLKNEVFQSLDDQRVLDLKYTAPLQSHQRSLSMNRIPVLTDNASLSLLRRPSSPTSSAKSLALSDQGSAPIMAQTSIGEVQNLTIKKETLSELKCEPSVGMEKLLGALHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRASRHFTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQSRHGHVVYREAASVLPATSPAHDEDAEDDRLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYPLSGASSTGSLLSAHVPATLRHASSLTCVNGPGSYNSRGESSNSRLTPDIPPLLQEIMDVEHLWQYNESELNRIGKSTGGSPSANPLLAASGITAQNSSPDFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLQQSAKLGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELREAEKVRASQEKALAALQAYIATHSPQTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKNKDGDGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00033911;
90% Identity
iTF_00806824;
80% Identity
iTF_00650129;