Basic Information

Gene Symbol
-
Assembly
GCA_963580505.1
Location
OY756979.1:12008305-12016095[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 4.5 4.1e+02 2.6 1.2 1 23 54 77 54 77 0.94
2 20 0.4 37 5.9 6.5 1 23 84 107 84 107 0.97
3 20 2.7 2.5e+02 3.3 4.5 1 23 192 214 192 214 0.97
4 20 0.0019 0.17 13.2 1.0 2 23 220 241 219 241 0.97
5 20 2.3 2.1e+02 3.5 1.5 1 23 247 269 247 270 0.94
6 20 0.86 79 4.8 3.0 2 21 506 525 505 526 0.94
7 20 2.9 2.6e+02 3.2 0.6 1 23 624 646 624 646 0.81
8 20 0.59 54 5.4 0.4 2 23 782 803 781 803 0.96
9 20 0.04 3.7 9.0 0.6 3 23 885 905 884 905 0.98
10 20 0.034 3.1 9.3 0.5 1 23 913 935 913 935 0.97
11 20 0.1 9.2 7.8 3.6 1 23 975 997 975 997 0.95
12 20 0.00026 0.024 15.9 4.0 1 23 1005 1027 1005 1027 0.99
13 20 0.85 77 4.9 1.0 1 23 1190 1212 1190 1212 0.96
14 20 0.055 5.1 8.6 0.1 2 23 1219 1240 1218 1240 0.97
15 20 0.0088 0.8 11.1 1.6 1 23 1306 1328 1306 1328 0.95
16 20 0.015 1.4 10.3 0.9 1 23 1334 1356 1334 1356 0.95
17 20 0.0073 0.67 11.4 2.6 1 23 1446 1468 1446 1468 0.97
18 20 0.00018 0.017 16.4 1.4 1 23 1474 1496 1474 1496 0.99
19 20 0.34 31 6.1 2.0 1 23 1587 1609 1587 1609 0.96
20 20 0.0066 0.6 11.5 3.5 1 23 1620 1642 1620 1642 0.98

Sequence Information

Coding Sequence
ATGCTTCAGCAGATGTCCTCGTTGCTGAGCGGGCAAGTCGGCGAGGTCATAGCTAACGCACGCCCCCACGAAGGCCGCCACTGTGTGGACGTCCTCTCAGAGGCCTCTTCCGACGCGGCCGAAGATTATGAATTGCCGCATTGCAAGATAAGAAGGAACTATAGCTGTACGAAGTGTACTTTCTATACGCAGAACCCGCGCGCTTATCTCTTGCATACCCGCGACGTTCACTTTGGAAGATTTAAGATATACGACTGTCAACATTGTTTGTATGCCTCGAGACACCATCAGAAGCTCTTGAGACACATGAAGATGGTACATGCTGGGTTACCCATACCCTCGGCTTCGGCCACCAAAAGTGATGTAGAACCTCTTCTAAAGGCGGAGATAGAACCACCACCGCAAGCCCCCGCTAGTCCGACTGACAGCATCGAGCGGATGGAAGACTTGCTCGAAGAAATAGAAGAATGCGAAGAAATGCAGATAGACGACGAGGGCGAGGATCAATCTGAGCGAATGGAAGAGATTGATCCTAGAACAACTTTGTCCTCGGGAACCAAAAGAAACAAATTTTTCTCTTGCGACAAATGCAACTACGTTACCCATTTAAAGGCGAGATTCACCAAGCACGTCAAGTACCACTCGATGCCGATGATCAAGTGCACGATGTGCGACTTCCGCACTCCATACAAATGGAATTTGGATCGTCACATGAAAAATCACGGTGGGACCGGAATCTTCGTTTGTTCAAAGTGCACCTTCACCGCTGACATCAAGCAGAGTCTGACCGTACACGAAATGAATCATCACACACCGCCGGTGGGGCACGCCGTCGCAAGCCGGCGGCGCAACCGGGTTGGCGCCAGTGACTTGACGACCGGCGACCCGATGGGCGCGCTGCTCCCCAAGGAGGATGAAGGGAGCGGCGACTCGCACTCCTCACACTCGGCTTTGGACATTATGGGGTTACAATACGCCGAAAGAGATGTAGTCAGCTGCACCAGCGATTCTAATGATGCGAGTTCGTCGCACGCTGATACAAACAGAGACGGGTCCCTCGACGCGCCCGGTCGACATTCGCCTAGCTCAGCGACCGACGACCCAAAGTCACAAAAACAGAGCAGGAAGGCCCCCCGCCCGATACCGCAACTCATCCCACTGAACGCGTCAACTCCTAATCAAAAAACTTCCGGCGAACCGCCGGCAAAGAAATTCAAAGAATCCGCGAGCACAGAAGCATTCGGGAAAATCGAAAACTTACCGGAAGACATAACTTTAATTCCCGTTAACAATATTCCGGCCAAAGAAACCACGGTGCGTAAGAAAAATAACTCATTTTTCGATAAACTGAAAGAGAGGCTTTTAACTGAAACAGGTGAAGAAGGATCGTTGAAGTGCAAAAGCTGTGGTTTCGAAAGCAAATGTCTGTCGGAACATTCCGTACATGAGAAAAATTGCACCACTCAGTCCAACCGGATTACGATGAACGCGACGCTTCCAAGTATGGGATCCACTCGTTGCCAAAACTGTAGACATAGATGTAAATCGAGCGCAGATTTGTATGTGCACTTGCAGTCTTGTAAAAGGAAAGACAATGTCGCAAATGAAAACGTCCCAGACTCTAAATATAACCAACAAGCGTCAACATCGCAGTTTGAAAAAGAAACAGAACCTCATCCTATGGAAAACGTTGTTTTTGTCTGGAATAACATCAACCAAGAACCCAACAAATTCGATAGACCTTTAGACATAAATATTAACGATGATTCAACTACTCCTGACCCGAATAGACATTATGACAATGAAATCGTAGATGAAAATGAGAGCATGAACTTGTCACCGAATGGTTTAACTTATGGCAAGAGCGTTTATAAATGCCCAGATTGTAAATTCTGGGCGAGCACCGCATCAAGATTTCACGTGCACATTGTTGGTCACTTAAACAAGAAGCCATTCGAATGTTCGCTATGCAAATACAAGTCCAATTGGCGGTGGGATATCACGAAACACATAAAGTTGAAATCTGCTAGAGACCCGGAACACAACGACGCCAAGGTTCTAATGACAGATGAAACCGGCAGAAGAAACTACAGCAAGTACAACAAGTTTCTTGCAGTACCGGTTCCGGCTGAAGTAAACGAGACCCAATTCCAATACATAGATCCAAATGCAGCAGCAGATTCGTGCATGGAAGTAGATGAACCATTCGGAAATGAATCATCCGACATTTTGCACGTATCGTATGAAATGCAACCACTGAACTTGCAGACTCAGCCTATTGATAACTATAACGCGATGGACAGCATGAATCAAGACGTTAAAAAACCTAAGAAGACATTGTGGAAATGCAAAAAATGCAATTACAAGGATCCTTCTAAAGAAGCATTGTTGGAGCACGTCAGACAACACTCAAAGGAAAGCGGCGCGGACGACCCAGGGTGTCAGGGTAACAATAAGAAACTCGAGAACGCTCCTGATCCTGCAGACTTGGCATACCGCTGCGGACATTGCAACCAACTTTCTAACTGGAAACATGTTATACAGAGACACTGCCGATTGAAGCATGACGGAATCATCAAAGTCATCACTACAGTGAAGATTAAACCGGATCTGAGTCTAGTACCAGGCAGCGAAGGATCATACAGTGATCTGTGTACTAAATGCCCATATAAAGCCAATGATAAAAAGCAGCTCGAGGAACATTTGCAACAGCATCAACCGTCGCCAGATTCTATATTCAAGTGCTACTTCTGTCCTTACTTCGTTAAAGATGAACAAGATTTGATACAGCATCTTCTGTTACATGGAATAACCGACCCAGAGGATTATATTTCTAAAGCCATGGGTTGTAGGTCACCGTTACCGGACCGAATTTTGACCAGCGCAGAAATACCGCCTCCATCCAGCAGTGCGACAAAGCGTCATAAGTGTACCGAGTGCCCTTATGAAACAAATAGCAAATCTCAATTCATGTATCACGAACAATTCCACCGGCTTCCGGCAGACACCCCGTACAAATGCCCAGAATGCAATTATAGCGTTTCCAAGAGACATTTGCTTCACCAGCATCTGAGAGTACACGGAATACATCCCTCAACCGATCGCAAAAAACATGAGTCTGAAGCAGACCTGGAAGCCAACACGCCGTGTCAAAACAAACCAGACTGGAAATCAGACGTTCCCGACGAAATCCCATTTGTATGGGTTTCAGCGAGAAATGAATTCCACAAAATGTACAAGTGTCGCTTCTGCTCTTATGTTAACTCTCAAAAATGTAAACTACCTAACCATGAAAAAATCCATTGTCTTGAGTTTGAGAATAGCGACGTTATTATTTACAAGTGTTTAGAGTGTAAATTCACCTGTGATGATCCAGAAAAAGGGGCAGAACATTCCAAAAAGCACGGCCTGTTGTACGGGCGCATTTACAGTTATGTCCAAGATGATATTCCAGACGAAGAACAAATATCTAAATTACGAAGAGTGATTGAACAAGAAAAGGCTTTGGAAGAATCTACAAAGGAGGACAGCACCATAGCTGATCTACTATCTGAAAGTAAAATTATGTACTATTGTCAGAAATGTCCTgcctattattttaatgaaagtgAAATTAAAGTACATGAAAAGTTCCATGATGTTGCTTTGgataataaatgtaatatcTGTACATTCTCGGTTTCGGAAGAATATGAGCTGATTGCTCACACAGCTGTTCATTCAGATGATTACCATATAAGAACAAACATGTACAAATTTGTACACAATTACCACTCCCTTTACAAACCACCTCGCCTGGAATGTAGCCGCGATTCGGATTCTTTAGAAATTACGTGGATAGCTATAGCAAACAAACCCACCGAACACTCGGAGCCAGTccagaaaaaaacagaatataaaCACACACCAAAACAATATCACTGCAAAGAATGCCCTGCCAAGTTCTTCAAGAGTTCTGCACTCTCATATCATATGGGCTTACATGGCGGAGAAGGGGaacataaatgtaaaaaatgtaCTTATGCTGTTAAAAATGTTGGTAATTTAGCCAAACATGAAATATTGCACGAAATTGAAAACAAACCAACAGGTTGCGATTACGACTCAGGTGAAGACATGgattacaaaaatattccaCTGTCTGGTACAGATTTGTTCCAAAGAAAGACTGAAGCTCTGAAAAGGGTACTAATTGACAAAGATAAATTAGTCAAACCAAATGACCATTTTCCGCCTGTCCTTCAAGCCGATCCGCAGTTTGGGTACCTTATGCATGGCAATCCAGAGTTTATCTAcccaacatatttaaaaaatgggcGTCAAAAGGAGAAACGTTACAAATGCCACAAGTGCCCGTCCGCTTTCGAAAAGAGAGAACAGTATAAGATCCATTTATCACTTCACGGTTCAAAACAAAGATATAAGTGCGAGCTGTGCGATTATTCTGTAAAATATTACGCAAATTACGTTCAGCACATGCGGAAACACCAAATGAATGACGAAGCTCTAGCTGAGAGGAAGAAAGGCAGTAATGACATTGCCGAACCTGATAGTCAGGATGTAAAACTAGACGATAGCGGGGATAATATCAAATTAGCCATCAAAACGATGCCCAAAGGCGCGCCCAAGACCGATTTCCAGCAATTTTCGATCAGAGACCAGCAGACTCTGAGGCTTTTGCAGCGTAGAAGATCCATGAACGTTGGTGGAAAGGACGCCTGTTCCACTGAAGCCTCGCCAGCGAAAGAACGTAAGTTACACATGTGTCTACTCTGCCCGTACACCAACCAGCGACAGGACGCCCTAAACAACCACTACAGAAGACACGATGCCGGCGATGTAGTCAACATCGGAAACCATAAATGCTCCTACTGCGATTTAGTCGTCGTTCAATCACATTTCCTACGTGACCATTTGAAATCTCATTTCAGTTATCACAAAACTCTGACTCCTGAATGTTTCGTGGCTAATGAAAACGTGACTTTCACTATCAGTAAAGTGGACGAAGAAAGCGAACCTATTGATCTCAAATTGGACGTGAAAAGTAAAATTTTGTTTGATGAGGAAAGAATATttgtaaacattaaaactggcgAATTAATAGTAGAATAG
Protein Sequence
MLQQMSSLLSGQVGEVIANARPHEGRHCVDVLSEASSDAAEDYELPHCKIRRNYSCTKCTFYTQNPRAYLLHTRDVHFGRFKIYDCQHCLYASRHHQKLLRHMKMVHAGLPIPSASATKSDVEPLLKAEIEPPPQAPASPTDSIERMEDLLEEIEECEEMQIDDEGEDQSERMEEIDPRTTLSSGTKRNKFFSCDKCNYVTHLKARFTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGTGIFVCSKCTFTADIKQSLTVHEMNHHTPPVGHAVASRRRNRVGASDLTTGDPMGALLPKEDEGSGDSHSSHSALDIMGLQYAERDVVSCTSDSNDASSSHADTNRDGSLDAPGRHSPSSATDDPKSQKQSRKAPRPIPQLIPLNASTPNQKTSGEPPAKKFKESASTEAFGKIENLPEDITLIPVNNIPAKETTVRKKNNSFFDKLKERLLTETGEEGSLKCKSCGFESKCLSEHSVHEKNCTTQSNRITMNATLPSMGSTRCQNCRHRCKSSADLYVHLQSCKRKDNVANENVPDSKYNQQASTSQFEKETEPHPMENVVFVWNNINQEPNKFDRPLDININDDSTTPDPNRHYDNEIVDENESMNLSPNGLTYGKSVYKCPDCKFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAVPVPAEVNETQFQYIDPNAAADSCMEVDEPFGNESSDILHVSYEMQPLNLQTQPIDNYNAMDSMNQDVKKPKKTLWKCKKCNYKDPSKEALLEHVRQHSKESGADDPGCQGNNKKLENAPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGIIKVITTVKIKPDLSLVPGSEGSYSDLCTKCPYKANDKKQLEEHLQQHQPSPDSIFKCYFCPYFVKDEQDLIQHLLLHGITDPEDYISKAMGCRSPLPDRILTSAEIPPPSSSATKRHKCTECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIHPSTDRKKHESEADLEANTPCQNKPDWKSDVPDEIPFVWVSARNEFHKMYKCRFCSYVNSQKCKLPNHEKIHCLEFENSDVIIYKCLECKFTCDDPEKGAEHSKKHGLLYGRIYSYVQDDIPDEEQISKLRRVIEQEKALEESTKEDSTIADLLSESKIMYYCQKCPAYYFNESEIKVHEKFHDVALDNKCNICTFSVSEEYELIAHTAVHSDDYHIRTNMYKFVHNYHSLYKPPRLECSRDSDSLEITWIAIANKPTEHSEPVQKKTEYKHTPKQYHCKECPAKFFKSSALSYHMGLHGGEGEHKCKKCTYAVKNVGNLAKHEILHEIENKPTGCDYDSGEDMDYKNIPLSGTDLFQRKTEALKRVLIDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEALAERKKGSNDIAEPDSQDVKLDDSGDNIKLAIKTMPKGAPKTDFQQFSIRDQQTLRLLQRRRSMNVGGKDACSTEASPAKERKLHMCLLCPYTNQRQDALNNHYRRHDAGDVVNIGNHKCSYCDLVVVQSHFLRDHLKSHFSYHKTLTPECFVANENVTFTISKVDEESEPIDLKLDVKSKILFDEERIFVNIKTGELIVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00927143;
90% Identity
iTF_00650502;
80% Identity
-