Basic Information

Insect: Endotricha flammealis
Gene Symbol: -
Assembly: GCA_905163395.1
Location: LR990879.1:7182321-7189913[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.9 5.8e+03 -1.6 0.0 17 44 235 262 225 266 0.74

2 12 0.0045 14 6.8 0.1 21 52 267 298 257 300 0.84

3 12 0.086 2.6e+02 2.7 0.1 21 44 295 318 291 321 0.88

4 12 0.00015 0.47 11.5 0.1 11 45 312 347 304 353 0.86

5 12 0.53 1.6e+03 0.2 0.1 23 45 353 375 347 382 0.83

6 12 0.068 2.1e+02 3.0 0.2 11 44 368 402 360 405 0.82

7 12 0.0054 17 6.5 0.0 21 46 407 432 394 438 0.81

8 12 0.00033 1 10.4 0.1 21 52 435 466 431 468 0.88

9 12 0.059 1.8e+02 3.2 0.0 21 45 463 487 461 491 0.90

10 12 0.001 3.1 8.9 0.2 4 45 474 515 472 518 0.87

11 12 0.0036 11 7.1 0.0 21 46 519 544 515 550 0.88

12 12 2.6 7.9e+03 -2.0 0.1 30 45 556 571 551 574 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.9	5.8e+03	-1.6	0.0	17	44	235	262	225	266	0.74
2	12	0.0045	14	6.8	0.1	21	52	267	298	257	300	0.84
3	12	0.086	2.6e+02	2.7	0.1	21	44	295	318	291	321	0.88
4	12	0.00015	0.47	11.5	0.1	11	45	312	347	304	353	0.86
5	12	0.53	1.6e+03	0.2	0.1	23	45	353	375	347	382	0.83
6	12	0.068	2.1e+02	3.0	0.2	11	44	368	402	360	405	0.82
7	12	0.0054	17	6.5	0.0	21	46	407	432	394	438	0.81
8	12	0.00033	1	10.4	0.1	21	52	435	466	431	468	0.88
9	12	0.059	1.8e+02	3.2	0.0	21	45	463	487	461	491	0.90
10	12	0.001	3.1	8.9	0.2	4	45	474	515	472	518	0.87
11	12	0.0036	11	7.1	0.0	21	46	519	544	515	550	0.88
12	12	2.6	7.9e+03	-2.0	0.1	30	45	556	571	551	574	0.81

Sequence Information

Coding Sequence: ATGCATGGTAATGTTAATAGTTTAAGGGACCTAAACATAGACTCACCTCTCCAAGACCAAGAAACACTAGAATCAGACCAGGACGAAACACAACCTACTGTGTCCGACTTCAAAGATGATCTACCATTCGCCACAGTAAAAACGAAGAAAAAAATTAAAGGGAGACCTCATTTGAAAGTTACGAAAAAGGATTCAGTCGTCAAGCCAGTGGAAGAACAAAACGTCCCATCTACACAGAGGTTTTGTGAAGATTGCAATATACAATTTGAAACTTTGGAGGCGTGGAAATGTCATTTACTTACTTCACCTAAACATACTATAGACTGTGATAGCAGAACAATGAAACTAATTCTGCGCAAGTACAATCCGCCGCGGGGACTCGCAGCTAAATATGGTGAACCTCCAATGAAGAAAACTAAAGTAACACACACGGATATAAATGAAAAAACAAATTTACAAATCAACGCAAATATTCAACCAAGATGTCAGGAAACAGAAATAAATAACGCAGTTATCATTGAAACGCCAAAACCAAAAAATATTAACAAAACTACGTGTAACCAAACCGACATTGAATATATTTGCGACGATTGCGGCTCGAAATTCGATAATAAATGTTTACTTACTAAACATATAGAACATCATAATTTAATGAAATCTAAAATTCAATTGAGTCATGACAAAGGTAGTTTAAACGCGTCTTCATTGACAAGAAAAGATAAATCAAATATGTGCGAAATATGTAACAAGCGATTTACTACAAGAAGTGATTTAAAAACTCATTTAAGAACACACTCTGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTAATCGAAGTGATCATTTAAAAACCCATCTAAGAATGCACTCTGGAGAAAAGCCTTATAAATGTGAGATATGTAATAAGAGATTTAATGAAAGTGGTACTTTAAAAATCCATTTAAGAACACACTCAGGAGAAAAGCCTTATGAATGTGAAATATGTAAGAAGACTTTTAATCAAAATAGTAATTTAAAAAGCCATTTAAGAACACACTCAGGAGAAAAGTTTTTTAAATGTGAGATATGTAATAAGAGATTTAATCGTAGTGGTACTTTAAAAAACCATTTAAGAACACACTCTGGAGAAAGGCCTTATCTGTGTGAGATATGTAGTAAAAGATTTAATCTAAATGGTGATTTAAAACACCATTTAAGAACACACTCAGGAGAAAGGCCTTATAAATGTGAGATATGTAACAAGCTATTTACTACAAGTAGTCATTTAAAAACTCATCTAAGAACACATTCGGGAGAAAAGCCTTATAAATGTGAGATATGTAATAAGAGATTTAATGAAAGTGGTAATTTAAAATACCATCTAAGATTACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAATAAAAGATTTAATCATAGTGGTACTTTAAAAACCCATCTAAGAACACACTCTGGAGAAAGGCCTTATCTGTGTGAGATATGTAATAAAAGATTTAATCAAAATAGTGATTTAAAAAGCCATTTAAGAACACACTCAGGAGAAAAGCCTTACAAATGTGAGATATGTAATAACGGATTTATTACAAGTGGTAATTTAAAAACCCATCTAAGAATACATCAGGAGAAAAGCCTTACAAATGTGAGATTATGTAATAAGAGATTTAATCAAAGTGGTACTTTAAAAAAACATTTAAGAACACACTCTGGAGAAAAGCATGCTTCTGAGATATTAAAGGTCGAAACGCACTTGGGTTGCGCGGCGCTGCGCTGCACGGAGCGGCGCGGCGCGGCAAAATATTCTCATAGAAATTGTATGAACCTAACCGCACTACACTACAGCGGCGCTGCGCTACACGACGCGGCGCGGCGCGGCAAAATATTCTTCGGAGGCAACTTCTGCCGCGCCGCCCAGTGCCGCAAGTGCGGTATAGACAACTGCAGCGGCGCGGCATTTTTGCTTGACTGTTTCTACTTTCCGACGAACGATTGTTTTAATTAG
Protein Sequence: MHGNVNSLRDLNIDSPLQDQETLESDQDETQPTVSDFKDDLPFATVKTKKKIKGRPHLKVTKKDSVVKPVEEQNVPSTQRFCEDCNIQFETLEAWKCHLLTSPKHTIDCDSRTMKLILRKYNPPRGLAAKYGEPPMKKTKVTHTDINEKTNLQINANIQPRCQETEINNAVIIETPKPKNINKTTCNQTDIEYICDDCGSKFDNKCLLTKHIEHHNLMKSKIQLSHDKGSLNASSLTRKDKSNMCEICNKRFTTRSDLKTHLRTHSGEKPYKCEICKKRFNRSDHLKTHLRMHSGEKPYKCEICNKRFNESGTLKIHLRTHSGEKPYECEICKKTFNQNSNLKSHLRTHSGEKFFKCEICNKRFNRSGTLKNHLRTHSGERPYLCEICSKRFNLNGDLKHHLRTHSGERPYKCEICNKLFTTSSHLKTHLRTHSGEKPYKCEICNKRFNESGNLKYHLRLHSGEKPYKCEICNKRFNHSGTLKTHLRTHSGERPYLCEICNKRFNQNSDLKSHLRTHSGEKPYKCEICNNGFITSGNLKTHLRIHQEKSLTNVRLCNKRFNQSGTLKKHLRTHSGEKHASEILKVETHLGCAALRCTERRGAAKYSHRNCMNLTALHYSGAALHDAARRGKIFFGGNFCRAAQCRKCGIDNCSGAAFLLDCFYFPTNDCFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00648356;
90% Identity: iTF_00648356;
80% Identity: iTF_00648356;