Efla017129.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- PRDM7
- Assembly
- GCA_905163395.1
- Location
- LR990879.1:6649009-6658547[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.32 9.9e+02 0.9 0.0 22 47 316 341 305 347 0.80 2 10 0.06 1.8e+02 3.2 0.0 21 44 343 366 338 369 0.87 3 10 0.01 31 5.7 0.0 11 44 360 394 357 397 0.85 4 10 0.00083 2.5 9.2 0.0 21 47 399 424 395 430 0.86 5 10 0.029 91 4.2 0.1 18 45 424 451 423 454 0.88 6 10 0.0033 10 7.2 0.0 21 45 455 479 451 483 0.91 7 10 0.00014 0.44 11.6 0.0 21 45 483 507 479 510 0.91 8 10 0.0066 20 6.3 0.0 21 46 511 536 507 542 0.85 9 10 0.015 45 5.1 0.0 21 47 539 565 535 571 0.84 10 10 0.1 3.1e+02 2.5 0.0 11 44 556 590 554 593 0.80
Sequence Information
- Coding Sequence
- ATGTCTCGTCAACTACGGCCGAGACAGCGCATCAGCTACTATGAACCGGACGAACCTAATTTGGACGAATATGTCTATTGCGAGAAATGTGCCGACTTCGTTTACGAGTATTGCTCCATACACGGTCCCCTGTTGGTTGTACCCGATACTAAGGTCCCAGCGAAGACAGGTTACCCAGACTTCGTCCCAAGAGCAGCACTCACTATTCCCAGCGTATTCTTACACATAGCACCTTCTATAATACCTGGTGCAGGCCTCGGTGTCTTCGCTACGATGACTTTGCCACGAGGAGTTCGATTCGGCCCTTACCGCGGCAAACTGACAGATACGATCACTTCCAGATACTGCTGGCAGTTGTATGACGCCAATCGCAAGCCGAAGTCGGTGGTCGACGCCGAAGACGCGAACTCCTCGAACTGGATGCGTTATGTCAACTGCTCCAGACATTGGTTCGAGCAGAACCTCATTGCTTACCAGTACCAGGGACAGATATACTACAGAACAATAAAAATAATTCCTAAATTCACTGAGTTGATGGTGTTCTACGGCAGCGAATGCGCGGACACTATGGGCATTGATCTGCGCAAGTACAATTCGCCGCGAGGACTCGCAGCTCAATACGGTGAACCTCCTATTAAGAAGACTAAAATAACACACACGGATACAAAAGAAAAAAGAAATTTACAAATCAACACGAAAATTCAACCAAGATGTCAGGAAACAGAAATAAATAACGCAGTTATCATTGAAACGCCAAAACCAATAGATATTAACAAAACTACGTGTAACCAAACCGACATTGAATATATTTGCGACGATTGCGGCTCGAAATTCGATAATAAATGTTTACTTACTAAACATATAGAATTTCATAATTTAATGAAATCTAAAATTCAATTGAGTTATAACAAAGGTAGTTTAAACGCGTCTTCATTGACAAGAAAAGATAAATCAAAAATGTGCGAAATATGTAACAAGGGATTTACTACAAGTAGTCATTTAAAAACTCATCTAAGAACACACTCTGGAGAAAAGCCTTACAAATGTGAGATATGTAATAAGAGATTTAATGAAAGTGGTACTTTAAAAATCCATCTAAGAACACACTCCGGAGAGAAGCCTTATAAATGTGATATATGTAATATGAGCTATAGTCACAGTATTAGTTTAAAAACCCATCTAACAACACACTCTGGAGAGAAGCCTTATAAATGTGAGATATGTAATAAGAGCTTTAATCAAAGTAGTACTTTAAAAACCCATCTAAGAAGACACTCCGGGGAGAAGCCTTATAAATGTGATATATGTAATATGAGCTTTAGTCACAGTATTAGTTTAAAAATCCATCTAACAACACACTCCGGGGAGAAGCCTTATAAATGTGATATATGTAATATGAGCTTTAATCTAAGTGGTAATTTAAAAACCCATCTAAAAACACACTCCGGGGAGAAGCCTTATAAATGTGATATATGTAAAATGAGCTTTAGTCAAAGTAGTAATTTAAAAACCCATCTAAGAACACACTCCGGAGAGAAGCCTTATAAATGTGATACATGTAATATGAGCTTTAATCGAAGTGATAATTTAAAAACCCATCTAAGAACGCACTCCGGGGAGAAGCCTTATAAATGTGATACATGTAATATGAGCTTTAGTCAAAGTGGTACTTTAAAAACCCATCTAAGAACACACTCCGGGGAGAAGCCTTATAAATGTGATTTATGTAATATAAGATTTAATCATAATAATTCTCTAAAAGGACATCTAAGAAAACACTCTGGGGAATAG
- Protein Sequence
- MSRQLRPRQRISYYEPDEPNLDEYVYCEKCADFVYEYCSIHGPLLVVPDTKVPAKTGYPDFVPRAALTIPSVFLHIAPSIIPGAGLGVFATMTLPRGVRFGPYRGKLTDTITSRYCWQLYDANRKPKSVVDAEDANSSNWMRYVNCSRHWFEQNLIAYQYQGQIYYRTIKIIPKFTELMVFYGSECADTMGIDLRKYNSPRGLAAQYGEPPIKKTKITHTDTKEKRNLQINTKIQPRCQETEINNAVIIETPKPIDINKTTCNQTDIEYICDDCGSKFDNKCLLTKHIEFHNLMKSKIQLSYNKGSLNASSLTRKDKSKMCEICNKGFTTSSHLKTHLRTHSGEKPYKCEICNKRFNESGTLKIHLRTHSGEKPYKCDICNMSYSHSISLKTHLTTHSGEKPYKCEICNKSFNQSSTLKTHLRRHSGEKPYKCDICNMSFSHSISLKIHLTTHSGEKPYKCDICNMSFNLSGNLKTHLKTHSGEKPYKCDICKMSFSQSSNLKTHLRTHSGEKPYKCDTCNMSFNRSDNLKTHLRTHSGEKPYKCDTCNMSFSQSGTLKTHLRTHSGEKPYKCDLCNIRFNHNNSLKGHLRKHSGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00648357;
- 90% Identity
- iTF_00648357;
- 80% Identity
- iTF_00648357;