Basic Information

Insect: Endotricha flammealis
Gene Symbol: -
Assembly: GCA_905163395.1
Location: LR990879.1:7284153-7288505[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.35 1.1e+03 0.7 0.3 21 40 40 60 34 67 0.77

2 14 0.19 5.9e+02 1.6 0.0 22 49 364 391 353 394 0.81

3 14 0.00071 2.2 9.4 0.0 21 46 391 416 386 422 0.86

4 14 0.034 1e+02 4.0 0.1 21 45 419 443 415 446 0.85

5 14 0.00072 2.2 9.3 0.0 21 45 447 471 439 474 0.86

6 14 0.0016 4.9 8.2 0.1 21 46 475 500 471 503 0.87

7 14 0.0013 4 8.5 0.0 21 46 503 528 499 534 0.86

8 14 0.043 1.3e+02 3.6 0.0 21 45 531 555 527 558 0.88

9 14 0.0086 26 5.9 0.0 21 45 559 583 551 587 0.86

10 14 0.0015 4.7 8.3 0.1 21 51 587 617 583 618 0.85

11 14 0.0089 27 5.8 0.0 21 46 615 640 611 646 0.86

12 14 0.015 46 5.1 0.0 21 52 643 674 635 675 0.83

13 14 0.048 1.5e+02 3.5 0.1 21 45 671 695 667 698 0.89

14 14 0.0078 24 6.0 0.0 21 52 699 730 688 731 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.35	1.1e+03	0.7	0.3	21	40	40	60	34	67	0.77
2	14	0.19	5.9e+02	1.6	0.0	22	49	364	391	353	394	0.81
3	14	0.00071	2.2	9.4	0.0	21	46	391	416	386	422	0.86
4	14	0.034	1e+02	4.0	0.1	21	45	419	443	415	446	0.85
5	14	0.00072	2.2	9.3	0.0	21	45	447	471	439	474	0.86
6	14	0.0016	4.9	8.2	0.1	21	46	475	500	471	503	0.87
7	14	0.0013	4	8.5	0.0	21	46	503	528	499	534	0.86
8	14	0.043	1.3e+02	3.6	0.0	21	45	531	555	527	558	0.88
9	14	0.0086	26	5.9	0.0	21	45	559	583	551	587	0.86
10	14	0.0015	4.7	8.3	0.1	21	51	587	617	583	618	0.85
11	14	0.0089	27	5.8	0.0	21	46	615	640	611	646	0.86
12	14	0.015	46	5.1	0.0	21	52	643	674	635	675	0.83
13	14	0.048	1.5e+02	3.5	0.1	21	45	671	695	667	698	0.89
14	14	0.0078	24	6.0	0.0	21	52	699	730	688	731	0.82

Sequence Information

Coding Sequence: ATGTCTTTTCTAGCTGTATGTAGATTATGCTTATCTGTAAACACAAAAATGCATTTTATTTGCAACACACCATTACAGGAAGTTTATGAAAAACTGACGAGATGCTCTCTATACACATCGCAGAAACCAGTAGTGGCATGTTACATATGCTTAGCGCACCTCCAGAGTGCTCGCACACTGATGTTGAGGGCTTTGAAAGCTGAGGGAGTGCTCACAGAGATCCTGAATACAGAACCATTGCTGACAGAAAAATCAATAACAATTATTGACAGGGCGTCATATAAACTAAACAGCCCATTGACTTGTTCGCAAATAGAGCATATTGTTGTGGGTTCAACTCCTGTGAAAATTGAGGTGAAAGAAGAACCGACATATTTGGAGATTGAAAAGAAAAATATAGACATAGAACAAGACTCACCTCTCCAAGACCAAGAAACACTAGAATCAGACCAGGACGAAACACAACCTACTGTGTCCGACTCCGAAGATGATCTACCACTCACCACAGTAAAAACGAAGAAAAAAATTAAAGGGAGACCTCATTTGAAAGTTACGAAAAAGGATTTAGTCGTCAAGCCAGTGGAAGAACAAAACGTCCCATCTACACAGAGGTTTTGTGAAGATTGCAATATACAATTTAAAACTTTGGAGGCGTGGAAATGTCATATACTTACTTCACCTAAACATACTATAGACAGTGGTGGCAGAACAATGAAACTAATTCTGCGCAAGTACAATCCGCCGCGGGGACTCGCAGCTAAATATGGTGAACCTCCAATGAAGAAAACTGAAGTAACACACACGGATATAAATGAAAAAACAAATTTACAAATCAACGCAAATATTCAACCAAGACGACAGGAAACAGAAATAAATAACGCAGTTATTATTGAAACGCCAAAACCAAAAAATATTAACAAAACTATGTGTAACCAAACCGACATTGAATATATTTGCGACGATTGCGGCTCCAAATTCGATGATAAATGTTTACTTACTAAACATATAGAACATCATAATTTAATGAAATCTAAAATTCAATTGAGTTATAACAAAGGTATTTTAAACGCGTCTTCATTGACAAGAAAAGATAAATCAAATATGTGCGAAATATGTAACAAGGGATTTACTACAAGTAGTCATTTAAAAACCCATCTAAGAATACACTCAGGAGAAAAGCCTTACAAATGTGAGATATGTAAGAAGAGTTTTAATCAAAGTGGTAGTTTAAAAAAACATTTAAGAACACACTCAGAAGAAAAGCCTTACAAATGTGAGATATGTAATAAGAGATTTAATGAAAGTGGTCATTTAAAAACCCATCTAAGAACACACTCAGGAGAAAAGCCTTACAAATGTGAGATATGTAAGAAGAGTTTTAATCAAAGTGGTAGTTTAAAAAAACATTTAAGAACACACTCAGAAGAAAAGCCTTACAAATGTGAGATATGTAAGAAGAGATTTAATCAAAGTGCTCATTTAAAAACCCATCTGAGAATGCACTCAGGAGAAAAGCCTTACAAATGTGAGATATGTAATAAGAGTTTTAATGAAAGTGGTCATTTAAAAAGACATCTAAGAACACACTCTGGAGAAAAGCCTTACAAATGTGAGATATGTAATAAGAGATTTAATGAAAGTGGTACTTTAACAAAACATTTAAGAACACACTCTGGAGAAAAGCCTTACAAATGTGAGATATGTAATAAGAGATTTAATGAAAGTGGTCAATTAAAAAAACATTTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAATAAGAGATTTATTCAAAGTGAACATTTAAAAACCCATCTAAGAATGCACTCTGGAGAAAAGCCTTTTAAATGTGAGATATGTAAGAAGAGTTTTAATAAAAATGGTAATTTAACAAAACATTTAAGAACACACTCTGGAGAAAAGCCTTACAAATGTGAGATATGTAATAAGAGATTTAATGGAAGTGGTCATTTAAAAACCCATCTAAGAATGCACTCAGGAGAAAAGCCTTACAAATGTGAGATATGTAATAAGAGATTTAATGAAAGTGGTCATTTAAAAACCCATCTAAGAACACACTCAGGAGAAAAGCCTTACAAATGTGAGATATGTAATAAGAGTTTTAATGGAAGTGGTCATTTAAAAACCCATCTAAGAATGCACTCTGGAGAAAAGCCTTATAAATGTGAGATATGTAATAAGAGATTTACTGCCATACAAGACACTACGGAGTCACTCTAG
Protein Sequence: MSFLAVCRLCLSVNTKMHFICNTPLQEVYEKLTRCSLYTSQKPVVACYICLAHLQSARTLMLRALKAEGVLTEILNTEPLLTEKSITIIDRASYKLNSPLTCSQIEHIVVGSTPVKIEVKEEPTYLEIEKKNIDIEQDSPLQDQETLESDQDETQPTVSDSEDDLPLTTVKTKKKIKGRPHLKVTKKDLVVKPVEEQNVPSTQRFCEDCNIQFKTLEAWKCHILTSPKHTIDSGGRTMKLILRKYNPPRGLAAKYGEPPMKKTEVTHTDINEKTNLQINANIQPRRQETEINNAVIIETPKPKNINKTMCNQTDIEYICDDCGSKFDDKCLLTKHIEHHNLMKSKIQLSYNKGILNASSLTRKDKSNMCEICNKGFTTSSHLKTHLRIHSGEKPYKCEICKKSFNQSGSLKKHLRTHSEEKPYKCEICNKRFNESGHLKTHLRTHSGEKPYKCEICKKSFNQSGSLKKHLRTHSEEKPYKCEICKKRFNQSAHLKTHLRMHSGEKPYKCEICNKSFNESGHLKRHLRTHSGEKPYKCEICNKRFNESGTLTKHLRTHSGEKPYKCEICNKRFNESGQLKKHLRTHSGEKPYKCEICNKRFIQSEHLKTHLRMHSGEKPFKCEICKKSFNKNGNLTKHLRTHSGEKPYKCEICNKRFNGSGHLKTHLRMHSGEKPYKCEICNKRFNESGHLKTHLRTHSGEKPYKCEICNKSFNGSGHLKTHLRMHSGEKPYKCEICNKRFTAIQDTTESL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00648350;
90% Identity: iTF_00648365;
80% Identity: iTF_00648350;