Efla003940.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- -
- Assembly
- GCA_905163395.1
- Location
- LR990862.1:589240-598178[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 5.6 6.5e+03 -2.2 0.0 23 38 44 60 43 65 0.78 2 5 2.4e-10 2.8e-07 31.0 0.0 4 39 177 213 174 217 0.89 3 5 3.9e-11 4.5e-08 33.6 0.3 2 39 229 266 228 269 0.92 4 5 2.7e-15 3.1e-12 46.9 0.1 2 45 284 328 283 328 0.96 5 5 1.4e-18 1.7e-15 57.3 0.1 1 43 335 378 335 380 0.96
Sequence Information
- Coding Sequence
- ATGCCTGGCTACGGACTAGCACAAGTAAAATGCGAACCGCTTTCAGACGACGAGGACAGCAACACTCACATTACACACGTCTTCCTAACTAGCCAACTACCCTCCTCACATCACGTAAAGTCGGAGAATTGCCGAGAACACGATGTGCCATCAGACCTATTACACCTACAACATTTGCAGTCACAAGGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCCGCCGCCACCCCCGTCTGCGTCAAGCAGGAGCCCGCGGAGGCGCCGCCCGCGGCCACGCTCGAGACCCTGGAGCCAGCGCCTCATACCGCTTTAGGAGCGACTCTCCTCGACAGACACATGTCCATGCTGTGCTCAAACAAAGTGCCTGAAGTATCAGACTTTATGCCTCTGATGAACGTCAAAGATGAGCCATTGTCTGAAGGAGAGCAACATCAATACAGCGGCGAGGACACGAGTGATTCTTGCGGTACTCAGCCGGAGCCAGTTCCGCGCTGCAGCCCCAAGAGTTGGACCCAGCGGGACATGGAGAACGCGTTAGATGCTCTCAGGAAGCACAACATGAGTCTTACCAAGGCTTCAGCGACATACGGCATTCCGTCCACGACGCTCTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGAGCTTCAAAGTCTTGGAGCGAGGCGGATCTGCGAGGCGCCTTGCACGCGCTGCGAGCCGGCGCCATTTCTGCAAATAAGGCTAGCAAGGCTTATGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGCCGCGAGGGCATCCGGCTGGCGGCGCCCTTCAACGCGGCGCCCACGGCCTGGCGCCGCGCCGACCTGGAGCGCGCGCTGCACTCCATCCGCTGCGGCGCCGCCTCCGTGCAGCGCGCCGCCTCCCAGTACGGGATTCCCACAGGAACATTGTACGGGCGATGCAAACGCGAGGGCATCGAGTTGTCCCGCTCCAACCCGACACCGTGGTCTGAAGATGCTATGGGGGAAGCTCTGGAAGCTGTAAGAGTGGGTCAGATGTCCATCAACCAGGCAGCCATCCACTACAACCTGCCTTACTCTTCGCTGTATGGGCGGTTCAAGAGGTGCAAATACCAATCACAGGCCATACAACCAATACAACAGGATATACAAAAAATGGAGATGGAGCACCAAAGTCAGCCTCAAGAGATGTTCTACCCGATGACACATTTACAACAACTGCCAGAGGAGCACATTCCCTACATACAACATAATATACATGTGTCTGAGCCTACACATGATTTGCATGTGCCCATACAAGACCCGTACGGCCAAAGTATGTATTACCAGACCTGCAACAGTATGGTGAGTTGA
- Protein Sequence
- MPGYGLAQVKCEPLSDDEDSNTHITHVFLTSQLPSSHHVKSENCREHDVPSDLLHLQHLQSQGGLEELAPLAPAGPAATPVCVKQEPAEAPPAATLETLEPAPHTALGATLLDRHMSMLCSNKVPEVSDFMPLMNVKDEPLSEGEQHQYSGEDTSDSCGTQPEPVPRCSPKSWTQRDMENALDALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALHSIRCGAASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSQAIQPIQQDIQKMEMEHQSQPQEMFYPMTHLQQLPEEHIPYIQHNIHVSEPTHDLHVPIQDPYGQSMYYQTCNSMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00720139;
- 90% Identity
- -
- 80% Identity
- -