Ecoc036608.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- -
- Assembly
- GCA_958510875.1
- Location
- OY294069.1:59353295-59365238[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.1e-07 0.016 17.1 0.3 14 45 241 272 225 281 0.70 2 4 0.0026 80 5.2 0.0 10 43 320 354 313 358 0.82 3 4 0.001 32 6.5 0.3 21 46 360 385 352 393 0.78 4 4 0.0071 2.2e+02 3.8 0.0 11 46 405 441 396 445 0.81
Sequence Information
- Coding Sequence
- ATGAACAAATCAGAcgatttgatcaaaatatgcCGTACTTGTTTAACAGAGAATAGTGTAATGAGATCTTTATTCAACGTAGAAGAGTTTATACAAGAACAGAAAATATTGTATACTATACTAATTACATGTGTCTCAATGGAGATTTATGAAGGTGACGGCCTACCAGAGAATATATGTTTCACTTGCATTGAGGAACTGAAGCGTGTTTTTCTCTTTAGACAACTCTGTTTAAAATCAGAATCAACTTTGAGAAATAATGCTGATACTCAATACTGTGATGATAGTATTAGTATACACAACTTTGAGTGTGGTATCAGTGGTAGCACAATCAATAATTGTACTAATGAACAGGATGATGTCAAAGAAGTTTCATTATTATTAGAGAATGAACGAGCTTGTGAATCCATTGAAACGAATGAAATAAAAGAACAGAGTAGTCATGATCTGAACGAAACTGTGGACACAAAAGAGCATTCTCAAAAAGAAGTATTTGTAATACCTGACGCTGCCAATTACAACAACAAACACAAGTGTAAGCTTATGTATGTAAAAcgcagaaaaaaatttatttgtgaacaCTGTGGCAAAAAATTTCTGAGTGCAACTTTTCTATCAGACCATTTATTAATTCATACTAAAGAgaaacaaaaacagaaaactGGAGTAACGGGAAAGACGAAGCAAAACCATAGACCTGGAATTACAGTAAAGAAGAATAAAACTGATATCATAAAACAACATAATCAACCAAAAACATGTGATATCTGCAATAAAACATTCAGATTTCATAGTAACTTGAATAGACACAGAATAATCCACACTGGAGAAAAACCATTTCTGTGCAATGTTTGTGGTCGAGGATTTGCTCAGATGGcctatttgaaaattcattccTTCATTCACACTGGTGAAAAGCCGTACAAATGCAACATGTGTGAGAAAGGTTTCTCTGCTCCTGGTACACTGATGACTCATATAAGAACACATACTGGCGAGCGTCCACATATTTGTGACATTTGCGGGAAAGATTTCAATCAGTCAGGATACCTAAAGGCACACAAACGGACTCATACGGGCGAGAAGCCAATTGAGTGCGGTATTTGTCACCAGAGGTTCAATCAAAGCGGTCGCCTTATCATTCATATGAGACGTCACAGTGGTGAGAAGCCTTACGTATGTGAACAATGTGGTAGAAGTTTTGCAGTAAAAGGTACGCTGAAGAAGCATCAGAGAATTCATACTGGTGAAAAACCGTATATTTGTAGTGTGTGTGGGCAAGCTTTTACACAAAATGGGACTCTGGCAACTCATATGAAAATACATAAAGATAAACTGAAGAAAAATGAAGACAATTAG
- Protein Sequence
- MNKSDDLIKICRTCLTENSVMRSLFNVEEFIQEQKILYTILITCVSMEIYEGDGLPENICFTCIEELKRVFLFRQLCLKSESTLRNNADTQYCDDSISIHNFECGISGSTINNCTNEQDDVKEVSLLLENERACESIETNEIKEQSSHDLNETVDTKEHSQKEVFVIPDAANYNNKHKCKLMYVKRRKKFICEHCGKKFLSATFLSDHLLIHTKEKQKQKTGVTGKTKQNHRPGITVKKNKTDIIKQHNQPKTCDICNKTFRFHSNLNRHRIIHTGEKPFLCNVCGRGFAQMAYLKIHSFIHTGEKPYKCNMCEKGFSAPGTLMTHIRTHTGERPHICDICGKDFNQSGYLKAHKRTHTGEKPIECGICHQRFNQSGRLIIHMRRHSGEKPYVCEQCGRSFAVKGTLKKHQRIHTGEKPYICSVCGQAFTQNGTLATHMKIHKDKLKKNEDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00647445;
- 90% Identity
- iTF_00647445;
- 80% Identity
- iTF_00647445;