Eonu005784.1
Basic Information
- Insect
- Empoasca onukii
- Gene Symbol
- -
- Assembly
- GCA_018831715.1
- Location
- CM032059.1:822090-823301[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.38 5.5e+03 -1.2 0.3 26 44 69 87 60 91 0.73 2 10 0.031 4.5e+02 2.3 0.0 21 44 92 115 88 118 0.86 3 10 0.0023 33 5.9 0.1 21 48 120 147 117 150 0.88 4 10 0.016 2.4e+02 3.2 0.0 21 44 177 200 173 209 0.86 5 10 0.3 4.3e+03 -0.8 0.0 21 43 205 227 202 236 0.82 6 10 0.00012 1.8 10.0 0.0 21 51 233 263 228 266 0.87 7 10 0.3 4.3e+03 -0.8 0.1 21 44 261 284 257 292 0.76 8 10 0.017 2.5e+02 3.1 0.0 23 46 291 314 287 321 0.84 9 10 0.22 3.2e+03 -0.4 0.0 22 45 318 341 306 352 0.83 10 10 9.4e-06 0.14 13.6 0.3 23 51 375 403 361 403 0.92
Sequence Information
- Coding Sequence
- ATGGAGGACATTGTAGTAAAAGAAGAATATTCCTCTGATCAATCAGCTTGCGGAGATCTTGTTGTTGAACATGTTGAACACAGTGCACACGGGATCTTCTCTGGGATCGGATGTCAGTGTACAAGGTGTGtggaaatatttatgtatagcAATGGTAGTCTAAGTAGAACAAGAGTAAAAGTGCCCAAAAAGAAGAAGTCTTATCAGTGCAGAGTGTGTGGGGCTTGCTTCCCCAAGCCATGTAAGTTGTCAAGACACATTCTGACCCACACAGGCGAGCGGCCATATACGTGTGAACTGTGCGGTCAGACATTCCAAACCAACGATAAGCTCAAGGGTCATCTGTTTAAACATACAGGTGAAAAGCCTCTCACCTGTTCCTACTGTGGCGAGAGGTACGCACTCAACGCTGACCTCAAGAGACACCTACGTCAAAAACACACCGGCGTAAAGCGCTTCCAGTGCGGCGAGTGTGACAAGAGTTTCCTGGAGATGGAGTGGCTCAAGACGCACATGATGACTCACACGGGAGAGAAACCACACAAGTGCAGCTTCTGTGAGATGAAGTTCAGGCAAGTTGGACATCTCAAGTCACACACCCTCACCCACACCGGCGAGAAACCATTCCAGTGTTCAGAGTGTGGCAAGAGTTTCACACAGTCCCAAGGGCTTGTCGTACACAAGCTCGTGCACACCGGGGAGAAGCCTCATGCGTGTGAGGTGTGTGGCGCTAAGTTCCAGCAGTCGGGAGGGCTCAAGACTCACATGCGAGTTCACACAGGGGAGAAACCCTACCGGTGCACCTTCTGCGAGGCCAGCTTCACTGTGCGCTCTTACCTCAGCGCTCACCTACTACATCACACTGGCGTGAGACCCCACACCTGCCAGACTTGCGGCAAAAGCTTCAAGCAGAGCGGCTACCTGAAGATACACCAGCGTGTGCACACCGGTGACAAACCGTACAAGTGCTCTGTATGTGACAAGCGGTTCATGGTGAAGGGTAACCTGAAGGAGCACATGATGATTCATGGTGACGAGCGACCGTTCCAGTGTTCGTATTGTGACATGAGGTTCAAACTTAGAGGTACTCTCAAGTGTCATGTGCAGACACACCTTGGGCTCAAGCCGTACACATGTGTGCTGTGTAGTGCGAGCTTCTCTCAGAGTAACGCACTTAAGAAACATCGTGAGAGACTACATTCAGCAAAGTGA
- Protein Sequence
- MEDIVVKEEYSSDQSACGDLVVEHVEHSAHGIFSGIGCQCTRCVEIFMYSNGSLSRTRVKVPKKKKSYQCRVCGACFPKPCKLSRHILTHTGERPYTCELCGQTFQTNDKLKGHLFKHTGEKPLTCSYCGERYALNADLKRHLRQKHTGVKRFQCGECDKSFLEMEWLKTHMMTHTGEKPHKCSFCEMKFRQVGHLKSHTLTHTGEKPFQCSECGKSFTQSQGLVVHKLVHTGEKPHACEVCGAKFQQSGGLKTHMRVHTGEKPYRCTFCEASFTVRSYLSAHLLHHTGVRPHTCQTCGKSFKQSGYLKIHQRVHTGDKPYKCSVCDKRFMVKGNLKEHMMIHGDERPFQCSYCDMRFKLRGTLKCHVQTHLGLKPYTCVLCSASFSQSNALKKHRERLHSAK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00645238;
- 90% Identity
- iTF_00645238;
- 80% Identity
- iTF_00645238;