Este027477.1
Basic Information
- Insect
- Empis stercorea
- Gene Symbol
- POL
- Assembly
- GCA_949752835.1
- Location
- OX457089.1:36814057-36833501[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0087 46 4.5 0.0 6 22 15 31 11 38 0.84 2 5 1.6 8.4e+03 -2.7 0.0 36 51 89 104 89 106 0.90 3 5 0.0054 28 5.2 0.0 5 22 262 279 260 285 0.85 4 5 0.00088 4.7 7.7 0.0 2 22 404 424 403 430 0.87 5 5 0.026 1.4e+02 3.0 0.0 8 22 562 576 560 582 0.84
Sequence Information
- Coding Sequence
- ATGTTTCACAACgggttcaataataataataattttaattaccagcAACAACCTCCGCTACCAACTGGATGGGATCGTCAATTTCATGATATGTCGAATGTGATTGCGGAACAACAAGGGAATGAACTGCGGGAGTTGCTCGCTAGGCAACAAATCGCGCCATCAGTACCACAGCCCCGGCATCAAATTCAAACAGCTGTCCGGTATGATTTACCGTCTACGCCACTGCCGCAATCGCCAGCAACTTCCGTACCATCCACTGGATATGCACCCAGACGGGATCGAGCTGAAAGTATTAGTGAGGatgaagaaattaattatagatCGCCGAAACCAGGGAATCGTAGAAATCCGGTAGCGAATTGGAAGATCCAGTTCGATGGTTCTGGAAAGGGGCTACCGTTACCGGAATTAATTTTCAGGGTGGAAACCTTAGCTCGTGGTGACCAATATCCAGTGGAGAGTCTTGTCCTGTCCATAAACCAACTCTTAAAAGGCAGGGCATACACATGGTACTGGCAGTTCATTCGGCGGAATCCACAGACAACTTGGTCCCTACTGAAAAAGGCGATAAAGGAGGAATTCGACGAAGGTGAAGAAGATGGGGACATCAACCGATTGATGGAAGCTCGGAAGCAGAGGTCGCGCGAGAAATTTTCGGATTTTAGGTTGGACATGGAGGGTCTGCGATTGCGTCTGAGACAGGAAATTTCGGACGATGATTTTCTGAACCGTCTCTTGTACAATTTGTATCCAGGCTATGAAAAGGCACTGATTTTGGAAAACGTGcAACAACCTCCGCTACCAACTGGATGGGATCGTCAGTTTCATGATATGTCGAATGTGATTGCGGAACAACAAGGGAATGAACTGCGGGAGTTGCTCGCTAGGCAACAAATCGCGCCATCAGCACCACAGCCCCGGCATCAAATTCAAACAGCTGTCCGGTATGATTTACTCGTGCAAGGAAATCGACCAATGCGAGAATTCATCACAGACATTGAAGGTCTGATTTCACGCATGACTGAATTGGAAGTTCAGCAACAAAGCGAAACGGCAAGACCAACATTAACAGCAGCGAATAACCGAAGGGGTTTAGCTTTTCTAAAAAAAGGAGTTAACGACAGGTACAAAATTGTGTTGGACTGTAATAGATATACAGAATTTAAGGAAGCCTGTAATCATCTACTTGAATTGGATCCAGGTACCGAAAGATCCAGCGAAcAACAACCTCCGCTACCAACTGGATGGGATCGTCAGTTTCATGATATGTCGAATGTGATTGCGGAACAACAAGGGAATGAACTGCGGGAGTTGCTCGCTAGGCAACAAATCGCGCTATCAGTACCACAGCCCCGGCATCAAATTCAAACAGCTGTCCGATCCCTAGAAATAAATGAGATAGAGCAAAGTAGTGAGAATACGCATAAATTAACTCTAGATAAAAAACAAACCTCACTGGAAATAATCGAGCTCTTTACATCCTACAGTGTGGCCGGGTTAGGTAAAACTAGCCTGTTGAAGCACGAAATCGATGTAGGTGATGCTAAGCCACAAGTTGTCCGTCCGTATCCTTTGTCTGTTCCAATGCAGAAAATCTTAGATGCTGAAATTgataaaatgttgaaagaaGATATAATAGAAGAGAGCAGAAGTGGATGGGCCTCGCCCTTGCTTATAcAACAACCTCCGCTACCAACTGGATGGGATCGTCAGTTTCATGATATGTCGAATGTGATTGCGGAACAACAAGGGAATGAACTGCGGGAGTTGCTCGCTAGGCAACAAATCGCGCTATCAGTACCACAGCCCCGGCATCAAATTCAAACAGCTGTCCGATCCCTAGAAATAAATGAGATAGAGCCAAGTAGTGAGAATACGCATAAATTAACTCTAGATAAAAAACAAACCTCACTGGAAATAATCGAGCTCTTTACATCCTACAGTGTGGCCGGGTTAGGTAAAACTAGCCTGTTGAAGCACGAAATCGATGTAGGTGATGCTAAGCCACAAGTTGTCCGTCCGTATCCTTTGTCTATTCCAATGCAGAAAATCTTAGATGCTGAAATTgataaaatgttgaaagaaGATATAATAGAAGATAGCAGAAGTGGATGGGCCTCGCCCTTGCTTATAGTGAAAAAGAACGGCACAATTAGACTGTGGCTAGACGCGAGAAAATTAAATGCAGTAACCAAGAGTGACGCGTATCCACTTCCGcatagaaattcaatttttagtacAGTTAAGGATACAAAATTCATTATCAGGCTCGACCTTAAAATGGCCTTCTGGCAAGTAGAGCTCGAAGAAGTCAAGAGACAAGACCGCATTCATAGTGCCAGGTCGTGGCCTattccaatttaa
- Protein Sequence
- MFHNGFNNNNNFNYQQQPPLPTGWDRQFHDMSNVIAEQQGNELRELLARQQIAPSVPQPRHQIQTAVRYDLPSTPLPQSPATSVPSTGYAPRRDRAESISEDEEINYRSPKPGNRRNPVANWKIQFDGSGKGLPLPELIFRVETLARGDQYPVESLVLSINQLLKGRAYTWYWQFIRRNPQTTWSLLKKAIKEEFDEGEEDGDINRLMEARKQRSREKFSDFRLDMEGLRLRLRQEISDDDFLNRLLYNLYPGYEKALILENVQQPPLPTGWDRQFHDMSNVIAEQQGNELRELLARQQIAPSAPQPRHQIQTAVRYDLLVQGNRPMREFITDIEGLISRMTELEVQQQSETARPTLTAANNRRGLAFLKKGVNDRYKIVLDCNRYTEFKEACNHLLELDPGTERSSEQQPPLPTGWDRQFHDMSNVIAEQQGNELRELLARQQIALSVPQPRHQIQTAVRSLEINEIEQSSENTHKLTLDKKQTSLEIIELFTSYSVAGLGKTSLLKHEIDVGDAKPQVVRPYPLSVPMQKILDAEIDKMLKEDIIEESRSGWASPLLIQQPPLPTGWDRQFHDMSNVIAEQQGNELRELLARQQIALSVPQPRHQIQTAVRSLEINEIEPSSENTHKLTLDKKQTSLEIIELFTSYSVAGLGKTSLLKHEIDVGDAKPQVVRPYPLSIPMQKILDAEIDKMLKEDIIEDSRSGWASPLLIVKKNGTIRLWLDARKLNAVTKSDAYPLPHRNSIFSTVKDTKFIIRLDLKMAFWQVELEEVKRQDRIHSARSWPIPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -