Este019920.2
Basic Information
- Insect
- Empis stercorea
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949752835.1
- Location
- OX457087.1:55501657-55517592[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2 3.2e+04 -8.0 8.8 218 264 212 256 36 276 0.68 2 3 2.5e-114 3.9e-110 368.7 32.0 1 299 285 574 285 575 0.94 3 3 0.29 4.6e+03 -2.6 5.0 221 244 604 627 577 649 0.46
Sequence Information
- Coding Sequence
- ATGGATAGCCCCGGCGCTGTTGGAAGGCGTCGAGGCAATGCCCGAGTTAATGCCGAGGATCAAGCTTTAGATCAAATTGCAAAAGAGccTACAAAGGATATTTTAATGGTTGATAAAAATGATGATGAACAGGAAGATGATGAAAATcattcaacaaataaaaaaattaaacattcaAATGATTTAAATACAAGCAATGATATATATGAAGATTGTCTTGATCAACAATCTGAAGAATTTGATTTTAGTGATGGTGATTTTATTGATtctgatgatgataataatagtaaacaaaataatattacaataataaataatttagataataatcataataataataatagtcaattaatatcaaatattgatgaaaatgattcaatattaaataatcaaattgataatgatactataaatttaaataaaactattagTGATGATGATATAGttaacacaaataataataataataaaaataatttagttcatttaaataatatacaagatcatattaaattaaatcatgaATTAAATGGTAATTTGATTACAATGACAACACCGACCACAGTACCAGCAATAATTGATGAAAAgactggtaataataataataataatgatcaaCATGATGAACAAGAAGgaacattaataaaattgaataaaattgatGACAATGACTTAGTTATAAAGgaagatgaaaaattattagtaaatttaaaaaaatgtaaaaatgaagAACGTGGTGATTGTAATATTAATGAAGATGATGATGCATTTTATTCAGACAATGAAAataatgttgatgatgatgatgatgaattaaTTGTTCAATTTTTGGGACATGCAAATCAATATgCAGAAGCAAGGCTGGCAGCCAGGCGTCAAGCTCGCGCAGAAGCACGAGAAATTCGTATGCGTGAACTGGAACGTCAACAAAAAGAATTAGAGCAAAATGCTGATCGTGTATTTGATATGCAAACAGCAGCTGGTATTGATCCTTTGGCTAGATCTCGTCTTACAATTACAACAAGTGGTGGTCATCAGATAGCACGTGGTAATTCAATGTCATCAAGACGTAGTAGTGAAGATTCATTAGAAGAGGAAGGTAGAAGTTTACGTGATATTAGACATGAGCTTAAGgaTGTTGAGGAACGTTTTCGTAAAGCAATGATTGCTAATGCACAATTAGATAATGAAAGAGCGTCACAATCGTACCAAATTCAATTACTCAAAGATAAAATGGAAGAAATGGAAGAATCATTTGCCCAATTACAACGTGAATTTAAAGATAAATCAAAAGATAATAATGCATTAAAACGTAATttggataaaattgaagaagaattaaaattagTACGAGGACAATTGAATGAACGTGATCATTTAATAAGTGAACAAGGTTTAGTTATTGTATTAGTTGAAAATGATGATGGTTCAGATGCCAAACGTGCTCTAGTCagtgttgaaaatgcacaattatTAGGTTCTGTACAAGGTTCTTTAGATGTTCGACTTAAGAAATTTACTGAAGAAAAACAACAGCTTCAAAGAGAAGTTCAAAATTTACAACAGCAATTAGATGATATTAAAAGTCAAGGTAAAGGACGAAGCGGTTCAATGAATGGTCCTTTAGGTGTTGACGATGATTATGAAGCACAAcgtgaagcaaataaaataatttccgaatataaatataaattacaaaaagcAGAACAAGAAATTGCTAGTCTTCAAGCTAGTTTAGCAAGATCTGAAACACAAGTAATACGATATAAAAGTACAGCTGAAGCAGCTGAAAAAGCTGAATcagaattaaaaattgaaagaagAAAATTACAACGTGAGaatCGTGAAGCAACTGAACGATTAGAAGAATTAGAAACATctaataaacatttattaaaacGTTTAGATAAACTGAAGAATGCTAAAAGTACATTATTAAAAGAGCTCTGA
- Protein Sequence
- MDSPGAVGRRRGNARVNAEDQALDQIAKEPTKDILMVDKNDDEQEDDENHSTNKKIKHSNDLNTSNDIYEDCLDQQSEEFDFSDGDFIDSDDDNNSKQNNITIINNLDNNHNNNNSQLISNIDENDSILNNQIDNDTINLNKTISDDDIVNTNNNNNKNNLVHLNNIQDHIKLNHELNGNLITMTTPTTVPAIIDEKTGNNNNNNDQHDEQEGTLIKLNKIDDNDLVIKEDEKLLVNLKKCKNEERGDCNINEDDDAFYSDNENNVDDDDDELIVQFLGHANQYAEARLAARRQARAEAREIRMRELERQQKELEQNADRVFDMQTAAGIDPLARSRLTITTSGGHQIARGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKMEEMEESFAQLQREFKDKSKDNNALKRNLDKIEEELKLVRGQLNERDHLISEQGLVIVLVENDDGSDAKRALVSVENAQLLGSVQGSLDVRLKKFTEEKQQLQREVQNLQQQLDDIKSQGKGRSGSMNGPLGVDDDYEAQREANKIISEYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAESELKIERRKLQRENREATERLEELETSNKHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -