Basic Information

Insect: Empis stercorea
Gene Symbol: rfx7.L
Assembly: GCA_949752835.1
Location: OX457087.1:47432780-47436653[+]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.5e-32 7.2e-28 97.8 0.0 3 77 145 219 143 221 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.5e-32	7.2e-28	97.8	0.0	3	77	145	219	143	221	0.97

Sequence Information

Coding Sequence: ATGTGcgattctaataaattttcagattttGGCAGACCGTTTATAAATAATACAACGACGTCGGCAgcacaaaaatattcattaaataatgtaaatacatATTCTGATTTAGATGTAAATCAATCTAATCAGATTCATGACAATCTTAATGTTAATGAAATCGATCTATTgcgtttaaataataaattccagAAAATTTCTGGTTTTGCAGAAGGTATAAAAGAAAACAAACAACTTCAAAATATTCAATGTGTAATTGAATCAaatttaagTGAACCAACTAAGAGaaaaatttgcaatatattAAGTGAAGTGTCATCCTTATCAgcacaagaaaaattatttttatatttgcgTCTACCACCTGAGAGTACAGAATGtgATCCATTGCGTCAGCCACAAAATCCATTAGGAAGTCGATCAGAAATAAATGTTACTATTACATGGGTTCGATCCCATTTAAAACATGATCCTAAAGTTTCAATACCCAAACAAGATGTTTATAGTGATTATAcTGCATATTGTGACCGCTTAGACATTAAGCCATTATCTACTGCCGATTTTGGAAAAGTAATGAAACAAGTCTTCCCTGAAATTAAACCACGTAGGCTTGGAACACGTGGTCATTCTCGATATTGTTATGCAGCAATGAGAAAAGCTACAAGATTATCTCCACCAAATCTACCTAAAATGAAGTCGGATTTTAATTCATCATTTTGTGTAgatgaaataaataatgatacttggcaaataattaaaatgtggTCAGAAGAAATTCTGAACTCTACTTTTCAGAGTATAACAGAGCTAGCTAATTTTATAAgcaaacataatttaaattcacaaaCTGAGAATTCTTCAAAGGCCTTATATCAAAAGAAAAAACTACAGCGTGAAATTAAAAGCAAACGAAAATTTCCGGAAACTATTTCGATTAAAAAgcgaagaaagaaaaaaacaaaagcaTCATTATATGCAGAaggatttcaaaaatataaaaattcaggagatttagatgaaaataataaattagatattgacaaaattcaaataaataactATCAAATAGAATGTGACCAAAAACCTGACAGATTAGATACACAATCAGTTCCCATAAATTTAACAtcagatgaaaaaaattatcaatttcctCCTTCAGAACGTGCCAAAATCATAGGTAATACAAATTGTGATAATATAACAGGAACAGAAAATAATTCCCcagaatttaagaaatattctaataatacACCGTATATCGATATTAAAGAAGAATATGAAGAAGAATATAACACAAATATACTTTGTAAAAAAGTTCGTCAAGCACAGCAATCAAAAGGATTATGGGTTCCACCAGATCATACCTTAATAAATTCGCAACAATACGTATCCAATACAAACTTTTCAATGGGACCACCGACAAATACAAGCACTAAATCACAAATACAAGCACAAAACTTGACATCATTTCATTCAAACTTAAATGAGATATCAGGACACagaaaacattttaatcatGATACATCAACAGTAGTATCGAAAAACTTAATGCAACTAAgtgcaaaaaaacaaaagtatttaCAAGCTAAAACTGAATCCCATTTGAATGATACAGAAAATATTGACGATGATAAAAATGTTTTGCCTGAAAACCTGGGATTACCCAGAGAACGTGTAATAAGTATATGTAATATGGATAAACATGAACTTGATGATTATTTAATTGGAGAAAATTCTGAAGACCAAGAAGCAGAACTGTTACAATATTTTCAACCTGACGATGTTAATGGAAACGAAAATGATATTTCCGAAAAAGTAAATGTGCCTTCTGGTGAAGATGCCGTCGAAATAGTACAATTAAGACATTATTTAcaccaaaattttcaaaacaacagGAACTTAAGTAATCTAGCTGAACAAAGATTACAAACACATCAAACAAATCCTTATACAGTACCTTATTCTGGCGGTCCTGCTTCAGCTTCTTTAGCAATTTTATCACAATTAAGTAACCGACCTGATCATATCGATATTGATAAGCCATATAAATTAGGACAAAGacggaaattaaatataaattctagaTCTGCATTAATTTCAAACAATGCAAAtacaaaacgaaaaaattttagttttgtaCCAATTTCATTAAGTGGTAATATATCCAGTGACAATAATCAATTTATTAGTCCAAAATCTAAATATGGTGTAGAGAGAACTGGAATGCATAAGCAAAAATCTCAAAAATCAATTGCCTTTAATATGTCAGATCCAATGATTGGAGCAATTCAAACGATTGAAAATGTTGTAAGTGCTTCTGCTCCACCAAGTCCTTCTGTATCACAACATAAATATCAATCGCATAATATGCAAAACTCTTTTAATTTGTCAAATTCATTTacacaaaatgtaaataatattccAAATTGTAGTTATCATGAAATGGTTGAATATCGTTCACGCAGTGTACCACTTCATATTAATACTAGTCCAGAATTTCATAAAAACGAAAATCTAAACGTATTGTTATCAAATTCAGTAACACCTACTCCTATTCCAAcagaatttaatgattttagCGAACCTTTAATAGATTTCTTTTCCGAAACAAATATACAATCATCTAATCAAATTGAAGTGTCTTCATTGCTAGATATAAACATtccattttcaaataaaaacgaaaacaaaaataaatatataaatatagaaaaatctgAATGTTTGAATACAAGTCGTTCTAATCCGTGTACTCCTTTGCCAAATAACATCCCTTTAAATAATTCGAGAAtagatatttttacaaatataaaacaaaacgagagtacaaaattatttgataCATCTAAATCAGTACCTTCAACACCATGTATGTTCACTGGTAGTCAATTTCGTTATAGTCCGGAAATTAATCGGGATTGCTTGCTAAGCGGAAATAGTGCAGAGCAAAATTTGGGATGCTACCAAAGACAACAAATAACAGGCATTAATATCAACAATCCTATATCTGCACTTGAAACTGCCAATACAGAAGAAATTGCTGCTACTTCTACTTGCACTCTAGATTCTACAAGATATAATTAA
Protein Sequence: MCDSNKFSDFGRPFINNTTTSAAQKYSLNNVNTYSDLDVNQSNQIHDNLNVNEIDLLRLNNKFQKISGFAEGIKENKQLQNIQCVIESNLSEPTKRKICNILSEVSSLSAQEKLFLYLRLPPESTECDPLRQPQNPLGSRSEINVTITWVRSHLKHDPKVSIPKQDVYSDYTAYCDRLDIKPLSTADFGKVMKQVFPEIKPRRLGTRGHSRYCYAAMRKATRLSPPNLPKMKSDFNSSFCVDEINNDTWQIIKMWSEEILNSTFQSITELANFISKHNLNSQTENSSKALYQKKKLQREIKSKRKFPETISIKKRRKKKTKASLYAEGFQKYKNSGDLDENNKLDIDKIQINNYQIECDQKPDRLDTQSVPINLTSDEKNYQFPPSERAKIIGNTNCDNITGTENNSPEFKKYSNNTPYIDIKEEYEEEYNTNILCKKVRQAQQSKGLWVPPDHTLINSQQYVSNTNFSMGPPTNTSTKSQIQAQNLTSFHSNLNEISGHRKHFNHDTSTVVSKNLMQLSAKKQKYLQAKTESHLNDTENIDDDKNVLPENLGLPRERVISICNMDKHELDDYLIGENSEDQEAELLQYFQPDDVNGNENDISEKVNVPSGEDAVEIVQLRHYLHQNFQNNRNLSNLAEQRLQTHQTNPYTVPYSGGPASASLAILSQLSNRPDHIDIDKPYKLGQRRKLNINSRSALISNNANTKRKNFSFVPISLSGNISSDNNQFISPKSKYGVERTGMHKQKSQKSIAFNMSDPMIGAIQTIENVVSASAPPSPSVSQHKYQSHNMQNSFNLSNSFTQNVNNIPNCSYHEMVEYRSRSVPLHINTSPEFHKNENLNVLLSNSVTPTPIPTEFNDFSEPLIDFFSETNIQSSNQIEVSSLLDINIPFSNKNENKNKYINIEKSECLNTSRSNPCTPLPNNIPLNNSRIDIFTNIKQNESTKLFDTSKSVPSTPCMFTGSQFRYSPEINRDCLLSGNSAEQNLGCYQRQQITGININNPISALETANTEEIAATSTCTLDSTRYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00642954;
90% Identity: -
80% Identity: -