Eliv014250.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963932195.1
- Location
- OZ010648.1:36622473-36629169[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1 2e+04 -9.0 8.3 91 133 80 120 21 204 0.55 2 3 5e-114 1e-109 366.7 30.5 1 299 266 555 266 556 0.92 3 3 0.14 2.8e+03 -2.5 5.0 221 244 585 608 558 630 0.46
Sequence Information
- Coding Sequence
- atgcAAACTGacgaagaaaataataataatattaaattattaaatgataatgatattttaatgattaatgataatgaaaattgtgaTAATTATCATGAACAagataattcaattaataataaaaacattaaacattctgatgatataaataatgatatattTGAAGATTGTGTTGAACAACAATCTGAAGAATTTGATTTTAGTGATGGTGATTTTATTGATtccgatgatgatgatgataataaacaaaacaatgataataaaaaaaataatattattaaattaaataatttagataataataaaaaattattattaaatattgatgaaaATGATTCTTCAATGGAAATTAATGAAacgataaatttaaatttaattcatacaaataatttaaataattcttgtgaaaataataatattgttagtaatttagttaatttaaatgataaacaagatcagaataatattaaattaaatcatgaATTAAATGGTGATTTTGTTACAATGACAACGTCGTCATTGTCGTCTCCGTCGACAGCAATAAATGATGAAAAgactaataataatgataaacaaaaattaaaattgaatatagaAAAGGCCAATGATTTAGTTATAAATGTAgataaagatttaatattaaaccataaaatttgtaatgaaaatggtgatggtgattgtaatattgatgatgatgatgatgatgcattttattcagaaaatgaaaataatgataaagaTGGTGGTGATGATGGTGAAttaattgtacaatttttggGACATGCTAATCAATATgCAGAAGCAAGGCTGGCAGCCAGGCGTCAAGCTCGTGCTGAAGCGCGAGAAATTCGTATGCGTGAACTGGAACgacaacaaaaagaattagAACAAAATGCTGATCGTGTATTTGATATGCAAACAGCAGCTGGTATTGATCCTTTGGCTAGATCTCGTCTTACAATTACAACAAGTGGTGGTCACCAGATAGTACGTGGTAATTCAATGTCATCACGACGTAGTAGTGAAGATTCATTAGAAGAGGAAGGTAGAAGTTTACGTGATATTCGGCATGAGCTTaaggATGTTGAAGAACGTTTTCGTAAAGCAATGATTGCTAATGCACAATTAGATAATGAAAGAGCGTCACAATCGTACCAAATTCAATTACTCAAAGATAAAATGGAAGAAATGGAAGAATCATTTGCACAATTACAACGtgaatttaaagataaatcaAAGGATAATAATGCATTAAAACGTAATTTGGataaaattgaagaagaattaaaattagtacGAGGACAATTGGATGAACGTGATCATTTAATAACTGAACAGGGCTTAGTTATTGTACTAGTGGAAAATGATGATGGTTCAGATGCCAAACGTGCTCTAGTCAGTGTTGAGAATGCACAATTATTAGGTTCTGTTCAGGGTTCTTTAGatgtTCGACTTAAGAAATTTACTGAAGAAAAACAACAACTTCAAAAAGAAGTCCAAAGCTTACAACAACAATTAGATGATATTAAAAGTCAAGGTAGAGGACGAGGTGGTTCAATGAATGGTCCTTTAGGtgttgatgatgattatgAAGCACAACgtgaagcaaataaaataatttcagaatataaatataaattacaaaaagcaGAACAAGAAATTGCTAGTCTTCAAGCTAGTTTAGCGAGATCCGAAACACAAGTAATACGATATAAAAGTACAGCCGAAGCTGCTGAAAAAGCTGAAtcagaattaaaaattgagaGAAGAAAATTACAACGTGAGaatcgTGAAGCAACGGAACGTTTAGAAGAATTAGAAACATCCAATAAGCATCTATTAAAACGATTAGATAAACTGAAGAATGCTAAAAGTACATTATTAAAAGAGCTCTGA
- Protein Sequence
- MQTDEENNNNIKLLNDNDILMINDNENCDNYHEQDNSINNKNIKHSDDINNDIFEDCVEQQSEEFDFSDGDFIDSDDDDDNKQNNDNKKNNIIKLNNLDNNKKLLLNIDENDSSMEINETINLNLIHTNNLNNSCENNNIVSNLVNLNDKQDQNNIKLNHELNGDFVTMTTSSLSSPSTAINDEKTNNNDKQKLKLNIEKANDLVINVDKDLILNHKICNENGDGDCNIDDDDDDAFYSENENNDKDGGDDGELIVQFLGHANQYAEARLAARRQARAEAREIRMRELERQQKELEQNADRVFDMQTAAGIDPLARSRLTITTSGGHQIVRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKMEEMEESFAQLQREFKDKSKDNNALKRNLDKIEEELKLVRGQLDERDHLITEQGLVIVLVENDDGSDAKRALVSVENAQLLGSVQGSLDVRLKKFTEEKQQLQKEVQSLQQQLDDIKSQGRGRGGSMNGPLGVDDDYEAQREANKIISEYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAESELKIERRKLQRENREATERLEELETSNKHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -