Eliv007273.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- -
- Assembly
- GCA_963932195.1
- Location
- OZ010646.1:49283543-49288723[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.6e-11 1.1e-07 31.6 0.0 1 38 577 615 577 620 0.90 2 4 8.9e-14 1.5e-10 40.8 0.2 2 39 632 669 631 672 0.94 3 4 2.6e-17 4.4e-14 52.1 0.0 1 45 686 731 686 731 0.98 4 4 2.7e-17 4.5e-14 52.0 0.1 1 43 738 781 738 782 0.96
Sequence Information
- Coding Sequence
- ATGAGTAAAATTGCGCATATGAAGGCAAATAACCTCAAACTAAAGTCAAAGGAAATGGATAGAAGGgGTCTTTTACGAACTGCCgaacaattaaaaatcaaaggATTATGCGAAACAGCTGATACTGTCGATGAAATATCAACAGAAACTGGATCAACAACAGCTACAATAACAGTGCCACAAGATACAATAATCCAACAACAGCAAATTGTCACATCAATTGCTAacaattcaatacaaaacgctTTAAtccaacaacaaaataataacaataatagtaataatagtgGCAGTAATAGTAATAGTGGTCAGGCGCAATTTcaatcaacatcatcatcatctttaGTGATACCACCAGCTGCAACATTAACAACCCAAACAACACAAAGAAAATCTAGAGTAAGAAAACGTTCAAAATCACCAAATGaatcaacagcaacaacagcagcagGAAATAATCAACAACATCAATCAATAATAACAAATCAATCATCATTTAATGGTGGTacatcaattattaatttaaattcaggtGTTGCTACAATAGTTCCAAGTGGTGGTGTTGGTTCAGGTGGTAATAGtaatagtagtagtagtagtataATAGCATTATCTTCTTCGGGTTCTGGTTCATCAAATAGTGTTGGACAAAATTCCGATTTAAAGTGTAATAATAGTGGGAGCAgtgataaaaatcaaaaacatttGATTGTAACAACAACTGGTTCCCCACTAAATGAATCATCTAATAGTTCAAATGGTAATAACGTTAAACCAgcgaaaatttgtaaaatagaaaattcgcCATCAAATAATGGAAATGGTATTGTTCAACAAGGTACAACAACAGCTATTGTAACACAAATTGTTGTAGCACGTGAAGGAAAAGATAGTAAAAATATGGCCAGTTTAGGAATGGgaatgaatggTGGTCTCTTAGGAGTACCAATGGGATTTTTAGATTTTGCTCCAGAACCACCGGCACCATCAGCAACACCAGTTTCTGTTAGTGAACATGTTGATATGAATTGTGCACCAAGCAATGATACTAGAGACTTAACAAATCCCACCGAAACTCTTGATATAGACAATCATTTAGCTCAGCATATAATTCAACGTTTAGATCAATCACCAATGCATCAAATAcaacatcatcaacaacagcaacaacaaaatcatttaCAGCAACATCACCAGCagcaacatcatcatcatcatcaacaacaacaacaacaacaacaacaacaacagcaacaacaacaacaacagcagcagcagcagcagcaacaacaacaacaacaacaaatacaaCAGCATCATCAAAATAATACCACCAATAATTCCAGCGAtgattcaaattcaaatttaatacaaaatattaaaagtgaaGTTATTGAAGTGAAACATCATCCACATTTGAtgcatcatcatcatcaacagcAGCAAGGACAATCAcatcaacagcaacaacagcagcatCAAGTAATTACGAATGCAACTGTAATGGAAATTGATCcggaaaacataaaacatgaACCCGGTATGATAATAACGCCAGAAATAGTCACTATGATGACTACCGGACACATGGACATTTACAATTCGGATACTAGTGAGGATTCTCTGATGATTGCGAATGGCAGCCCAAATGATAATAATGCTGAGCCGCATTATACGAATCTGGATCAACAGCACGACAATAGTAAGTTAAATGGCCCGAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCACAATATGAGCCTAACGAAAGCATCCGTCACCTATGGTATACCATCAACAACATTATGGCAGAGGGCACACCGCATGGGCATTGAGACACCAAAAAAAGAAGGTACAACAAAATCATGGAACGAAGAGGCTTTGAATAGTGCTTTGGAAGCATTGCGTACTGGCCAGATATCAGCAAATAAAGCATCAAAAGCATATGGTATTCCGTCCTCTACATTGTATAAGATAGCTAGACGAGAAGGTATACGATTAGCAGCACCATTTAATGCCGCACCAACCACATGGACACCCGAAGATTTAGAACGTGCCCTAGAAGCAATACGAGCTGGCCATACATCAGTACAAAAGGCAAGCATGGAATTTGGTATACCAACagGTACACTTTATGGACGATGTAAACGTGAAGGTATTGAATTGTCACGATCAAATCCTACACCTTGGTCTGAAGATGCAATGAATGAAGCTTTAGTTGCTGTTAGAGTTGGTCATATGTCAATAAATCAGGCAGCAATCCATTATAATCTTCCATATAGTTCATTATACGGTCGTTTTAAACGTGCCAAATATGATACAAATGTTACAACAGCTGCAACAGGTACAACATCAAGTAATACTAGCTTAAATACAAGTggtaatatagaaataatcgACCAAAGTCCAGAGAATTcggtTCATCTATTACAACAGTTTCAATATAGTCCGGGTCCAGCAACACCCCAACCTCATACACACcatcaacagcaacaacaacagcaacaaaatcaacagcaacaacaacaaacacATCATATTCAAATTCAACATCATTCGCAACAATCTCAACACCACCACAATCAACAACatctacaacaacaacaacagcaagaTGTTGTCACATCGACCAGTCAAGttcaccaacaacaacaacaacaacaacaacaaactggacaaattcaacaaatttatcACCACCATAGCACACCAGAGAgaagttga
- Protein Sequence
- MSKIAHMKANNLKLKSKEMDRRGLLRTAEQLKIKGLCETADTVDEISTETGSTTATITVPQDTIIQQQQIVTSIANNSIQNALIQQQNNNNNSNNSGSNSNSGQAQFQSTSSSSLVIPPAATLTTQTTQRKSRVRKRSKSPNESTATTAAGNNQQHQSIITNQSSFNGGTSIINLNSGVATIVPSGGVGSGGNSNSSSSSIIALSSSGSGSSNSVGQNSDLKCNNSGSSDKNQKHLIVTTTGSPLNESSNSSNGNNVKPAKICKIENSPSNNGNGIVQQGTTTAIVTQIVVAREGKDSKNMASLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVSVSEHVDMNCAPSNDTRDLTNPTETLDIDNHLAQHIIQRLDQSPMHQIQHHQQQQQQNHLQQHHQQQHHHHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQIQQHHQNNTTNNSSDDSNSNLIQNIKSEVIEVKHHPHLMHHHHQQQQGQSHQQQQQQHQVITNATVMEIDPENIKHEPGMIITPEIVTMMTTGHMDIYNSDTSEDSLMIANGSPNDNNAEPHYTNLDQQHDNSKLNGPKTWTQDDMNSALDALKNHNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGTTKSWNEEALNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASMEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVRVGHMSINQAAIHYNLPYSSLYGRFKRAKYDTNVTTAATGTTSSNTSLNTSGNIEIIDQSPENSVHLLQQFQYSPGPATPQPHTHHQQQQQQQQNQQQQQQTHHIQIQHHSQQSQHHHNQQHLQQQQQQDVVTSTSQVHQQQQQQQQQTGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00644006;
- 90% Identity
- -
- 80% Identity
- -