Basic Information

Transcription Factor Domain

TF Family: RHD
Domain: RHD domain
PFAM: PF00554
TF Group: Beta-Scaffold Factors
Description: Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 8.4e-05 0.28 11.3 0.0 1 92 8 105 8 123 0.66

2 3 2e-05 0.068 13.3 0.0 1 68 124 187 124 201 0.77

3 3 2.9e-05 0.097 12.8 0.0 133 166 235 267 221 269 0.88

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	8.4e-05	0.28	11.3	1	92	8	105	8	123	0.66
2	3	2e-05	0.068	13.3	1	68	124	187	124	201	0.77
3	3	2.9e-05	0.097	12.8	133	166	235	267	221	269	0.88

Coding Sequence: ATGGCTGATAACAattgcCAACTAGTTATTCTTGTCGAACCTAAAGATAATTTTCGTTTTCGACCTATCAACGATATATACCATGGATCACTTGCTGGAATTGATGACAATGTTATAACAGTAAAATTGGAAGGATTTAATGGGAGGCAAAATGATGTAGTAGTGTTATGTAGTATTTATCAACCAGATGGACAATACCAAATGTGTCCACATccaaatcttttaattaaacttgaaGGAAGAGGACACGGAAagcaaaaaattttagatCCAATACAATCAGAATTGCATGACGATTGGACATCAGtTTTAATGATAACAATTCCACCATATGAAAATGTTGGTATCACAGAAGTTGTAAattgcCAACTAGTTATACTTGTTGAACCCAAAGATAATTTTCGTTTTCGTACTATCAACGATGTAAACCATGGATCACTTCCTGGAATTGATGACAATGTTATAACAGTAAAATTGGAAGGATTTACTGGTAGGCAAAGTGATGTAATAGTGTTATGTAGTATTTATCAATCAGATGGCGAATATCAAATGATTCCACATccaaatcttttaattaaatcggAAGGAATAATATGGAAATGGAACAGAAACTTTGTATTAGATCCAATTGAATCAGGATTAAATGATGATGGGACAGCTCgttttccTGGACTAGAGATAatggCCAATATTGATCccgatatttttaatatgaataacATTCGATTATGTTTTGAAGCATTTGAAAGAAATGGTGAATCATTTTCACCAATCTGTAATCCAATATTTTCTCGTAATATCGCACATATTAtaagaGAACCTAAAGATTTTGTCTGGTATTGTGCAAAATGTACTGGTAAAGCTACTGgtaacaaaaatttgattattgttTGTGATTACCcagaaagtaaataa
Protein Sequence: MADNNCQLVILVEPKDNFRFRPINDIYHGSLAGIDDNVITVKLEGFNGRQNDVVVLCSIYQPDGQYQMCPHPNLLIKLEGRGHGKQKILDPIQSELHDDWTSVLMITIPPYENVGITEVVNCQLVILVEPKDNFRFRTINDVNHGSLPGIDDNVITVKLEGFTGRQSDVIVLCSIYQSDGEYQMIPHPNLLIKSEGIIWKWNRNFVLDPIESGLNDDGTARFPGLEIMANIDPDIFNMNNIRLCFEAFERNGESFSPICNPIFSRNIAHIIREPKDFVWYCAKCTGKATGNKNLIIVCDYPESK

Sequence clustering based on sequence similarity using MMseqs2