Ehyp008735.1
Basic Information
- Insect
- Elymnias hypermnestra
- Gene Symbol
- -
- Assembly
- GCA_015832385.1
- Location
- JACTOM010000103.1:278581-281718[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.13 11 7.4 0.6 1 23 69 92 69 92 0.92 2 19 6.6 5.4e+02 2.1 0.4 2 23 119 141 118 141 0.90 3 19 0.0097 0.79 11.0 5.2 2 23 164 185 163 185 0.97 4 19 1.2 93 4.4 0.8 1 17 189 205 189 211 0.84 5 19 0.037 3 9.1 2.6 1 23 216 239 216 239 0.96 6 19 0.65 52 5.2 5.3 1 23 246 269 246 269 0.95 7 19 0.0086 0.7 11.1 0.9 2 23 277 299 276 299 0.96 8 19 0.0075 0.6 11.3 3.2 1 23 305 327 305 327 0.97 9 19 7.2e-05 0.0058 17.7 1.8 1 23 333 356 333 356 0.98 10 19 0.013 1 10.6 1.0 1 21 362 382 362 383 0.92 11 19 0.034 2.7 9.3 0.1 3 23 442 463 440 463 0.89 12 19 0.12 9.9 7.5 0.0 2 23 489 511 488 511 0.94 13 19 0.33 26 6.2 0.4 2 23 534 555 533 555 0.95 14 19 5.6e-05 0.0046 18.0 0.5 1 23 559 581 559 581 0.97 15 19 5.3e-08 4.3e-06 27.5 0.7 1 23 586 609 586 609 0.98 16 19 0.0021 0.17 13.0 1.4 2 23 647 669 646 669 0.96 17 19 9.5e-05 0.0077 17.3 3.6 1 23 675 697 675 697 0.98 18 19 1.6e-05 0.0013 19.7 1.0 1 23 703 725 703 725 0.99 19 19 6.4e-05 0.0052 17.8 3.2 1 23 731 754 731 754 0.97
Sequence Information
- Coding Sequence
- ATGCTTTTCATTGTAGGTGTGCCGCGTAAAACTTCACACAAAGAGCGCTCGAAATCAAAAAGAGACTCAATAGAAAGAACGGATAAGAAGACTAGTGTTCCCAAAGTACGACAGGGTGAACAGTTAGATAAACATCGGACAAATATCAGGGAAATAATACAATGGACTAACGCAACTCCCATTCGCTGTAGAGGAGGCATCGGTTATGCTTGTTGCTTTTGTTCCGACCAATTCCCTGATCCCGCCGACTTGAAGAAACACACTATAGAATCGCACGATGATGTAACTAAATCTACTTTCATGAAAGGAAAGGATATGTACGGTTATTTAGTTAAAGTAGACATTACAGCGTGCAAATGTAATCTATGCGAAGCGAAAATTGAAACACTCGAACAAATTATGGATCACTTGAAAGATGTACACGATAGAAATATCAGTATAGATATACCGAATCATATTCTCCCTTTTAAATTTGATAGTGAGAATCTGCGATGTTTTATGTGCCACAATGTTTTTAACAGATTCAAAGCGTTACAAGAGCATATGCACACTCATTACAGGAACTACTTGTGCGAGGTCTGCGATGCGGGTTTCGTCAACCGGCACCTCTTGTTATGCCATAACGAAGGGCATAAAATTGGTGTATTCGCTTGCGAGCAATGTAATGAAGTGTTCGACACGTTAAGGAAAAAGAAACTGCATCATCGTAAGATACACGATGGTTTGAATAAGCCTCACAAATGTGGATACTGTGAGGAGAGGTTTAAGGAAAATTGCCACAAGATTGAGCATTTAGCAAAAGTCCATGGTGTTGTTGGTCCACTGATAAAGTGTCAGGCTTGTGATAGAACATTTGCAACGCAACAGACGTGGTTGTTACACACAAAGAAGTATCATCTGATGCAGAGACAGCACAAATGCAGTCGATGCGAAATGGATTTCTTTTCGAAACGAGAGCTAACTGATCATATGGTGAAGCACACAGGAACCAGGGAATATAGATGCGAAATGTGCTTTAAATCGTATGGTAGACTGAAAACTTTGAAAGAACACATACGTAGACTTCACCCGGAGGAGCGGAGATTCAAATGTGCAGACTGTGGACAGTCGTTTGATAAGAATTTAGCTTTAAAATGTCACATGAgtACACGAACAATAAAAATCGAAAGAGGAATTGCCAAACCCCGTGTGGAGCTGAAGATCGTTAGGCGCCACAGAGATAGTTATCTATCTGAAACCAGCAAAAATCACCAGAATCTCAGAACTATCTTGTTGAACTCCAACGCAAGCCCAATCAGATGTAAAGACAGCCTTGGTTACGGATGTGCATTTTGTCCAGAACAATTTCCTGTACCGACGAATCTTAAAAAGCACTTCTTAGATGAGCATAACAACGATAGACTGATAAAACTCATGTCTGGCAAACTATTTGACCACGTTGTTAAGTTAGATATCACTTACTTAAATTGTGCACTTTGCGGACAAGATATATCGAAACTCGAAGACCTAATGGCCCATCTTAAAAATGAACACTCAAAGGATATACATTTGGACATAAAAAGTGTTATAGTCCCATTTAAATTCGACACACCAGAACTCAGATGCGCTGTGTGCTCCACAGAGTATCTGAATTTCAAGCTTCTCCAAGAACACATGAATTCCCATTTCGGAAATTACATATGCTCAGTTTGCGGCAGGAGTTTTATGACTGAACGATTGCTGACCACGCATGTCAGTAGACACAAAAATGGTGAATACAAATGCGAGGATTGCGGGAAAGTCTTTGGTAACAAAGCCAATTTGAGGGAGCATCAGAAGCGTACGCATTTGGGCTTGAGCAAACGTAACAAATGCATGATTTGCAACGAGAGATTCTTGGGCTATTGGAAGAAAGTAGACCATATGGTTAAAGCACACGGAGCTCCCCCTGTGGTTATAAAATGCCAAGCTTGCGAGCGTACCTTTCAAAACCAGAGAGCTTTATCACGACACACTAAGAAGGATCATTTGATGGAGAGGAAACATAAATGTTCTGAATGCGAAATGCGATTTTTTAGCACTAGCAGTTTACAACGACATATGGCTAAGCATACTGGTTTACGGCAATTCCGGTGTGATGTGTGTTTCAAAGCGTATGGAAGGAAGAACACGTTAAGGGAGCATATGCGAATACATGCGGATGATCGCAGATTCTCCTGCACGCAATGCGGACAAGCATTTGTCCAGAAATGCAGCTGGCGTAGTCATATGCGTTCCAAACATGGAGTAGAAGcctaa
- Protein Sequence
- MLFIVGVPRKTSHKERSKSKRDSIERTDKKTSVPKVRQGEQLDKHRTNIREIIQWTNATPIRCRGGIGYACCFCSDQFPDPADLKKHTIESHDDVTKSTFMKGKDMYGYLVKVDITACKCNLCEAKIETLEQIMDHLKDVHDRNISIDIPNHILPFKFDSENLRCFMCHNVFNRFKALQEHMHTHYRNYLCEVCDAGFVNRHLLLCHNEGHKIGVFACEQCNEVFDTLRKKKLHHRKIHDGLNKPHKCGYCEERFKENCHKIEHLAKVHGVVGPLIKCQACDRTFATQQTWLLHTKKYHLMQRQHKCSRCEMDFFSKRELTDHMVKHTGTREYRCEMCFKSYGRLKTLKEHIRRLHPEERRFKCADCGQSFDKNLALKCHMSTRTIKIERGIAKPRVELKIVRRHRDSYLSETSKNHQNLRTILLNSNASPIRCKDSLGYGCAFCPEQFPVPTNLKKHFLDEHNNDRLIKLMSGKLFDHVVKLDITYLNCALCGQDISKLEDLMAHLKNEHSKDIHLDIKSVIVPFKFDTPELRCAVCSTEYLNFKLLQEHMNSHFGNYICSVCGRSFMTERLLTTHVSRHKNGEYKCEDCGKVFGNKANLREHQKRTHLGLSKRNKCMICNERFLGYWKKVDHMVKAHGAPPVVIKCQACERTFQNQRALSRHTKKDHLMERKHKCSECEMRFFSTSSLQRHMAKHTGLRQFRCDVCFKAYGRKNTLREHMRIHADDRRFSCTQCGQAFVQKCSWRSHMRSKHGVEA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01017935;
- 90% Identity
- -
- 80% Identity
- -