Esim011642.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Elegia similella
Gene Symbol
-
Assembly
GCA_947532085.1
Location
OX383950.1:16134352-16141937[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.88 67 5.1 4.1 1 18 222 239 222 244 0.89
2 19 0.01 0.79 11.1 0.8 1 17 250 266 250 272 0.91
3 19 1.3e-07 1e-05 26.5 3.1 1 23 278 300 278 300 0.99
4 19 4.1e-08 3.1e-06 28.1 1.8 1 23 306 328 306 328 0.99
5 19 1.2e-05 0.00088 20.4 4.0 1 23 334 356 334 356 0.99
6 19 5.4e-07 4.1e-05 24.6 2.7 1 23 362 384 362 384 0.99
7 19 1.1e-06 8.3e-05 23.6 3.8 1 23 390 412 390 412 0.99
8 19 1.6e-05 0.0012 20.0 4.5 1 23 418 440 418 440 0.99
9 19 9.8e-08 7.5e-06 26.9 1.6 1 23 446 468 446 468 0.99
10 19 1.1e-06 8.3e-05 23.6 3.8 1 23 474 496 474 496 0.99
11 19 1.6e-06 0.00012 23.1 3.1 1 23 502 524 502 524 0.99
12 19 5.1e-07 3.9e-05 24.7 2.6 1 23 530 552 530 552 0.99
13 19 4e-07 3.1e-05 25.0 2.8 1 23 558 580 558 580 0.99
14 19 1.1e-05 0.00081 20.5 5.5 1 23 586 608 586 608 0.99
15 19 5.1e-07 3.9e-05 24.7 2.6 1 23 614 636 614 636 0.99
16 19 2.1e-07 1.6e-05 25.9 3.0 1 23 642 664 642 664 0.99
17 19 6.5e-08 4.9e-06 27.5 1.4 1 23 670 692 670 692 0.99
18 19 1.6e-05 0.0012 20.0 4.5 1 23 698 720 698 720 0.99
19 19 1.3e-07 9.8e-06 26.6 2.2 1 23 726 748 726 748 0.99

Sequence Information

Coding Sequence
ATGCATCAGAGTCCAGCATTTTGCCGTATCTGCCTCGCAGTGGACGCGCCCATATTCAACATTGACGACACTGCCCTGCAACTCGTGTACGAGAGGCTGACGGGGGCTTTTCTCGTTGAAGGGAACAGGCCCGTGGCGGCATGCTACATCTGCCGCGCTATGCTGTACAAGAGCCACAAGCTGATGGTGACTGCTACCAGGGCAGACCATGCGCTGACTGCTATGTTGGAGACGGCTGGCGAGATTACAGAAAAGTCGATATCCCTGATTGACCGCGAGGCCATTGGCTTGTGTGCGTCGCTGTCCTTCTCTGTGGCTGAATGTTGTGACAGCACGCCGCCCGCCAGGGTCGCGGTCAAAACCGAGCCGGAGTCACAGGATGCTTTTGACACTGCGACAGACAATGAGGGTCCAGCAGGCGTTCCCGCGGCTGACGTGGACGAGACACGGGACTCCGATGAAGACGCGGGGGCGCGGGGCGGGGGACACTACGCGGACGGCGTTCCCGCGGCTGACGTGGACGAGACACGGGACTCCGATGAAGACGCGGGGGCGCGGGGCGGGGGACACTACGCGGACGATGGCGCAGCAGAGGGCCAACAGCCTGTGGCAGGAAGTTCCCGACACAGTTATTATGGCGAGCCTCAGAGCGCTGACACAAGGCaccagtgtcatgtttgtctgagggggtttcagaggaagagacatctacaaatatgcttgagaacgcacactggtgagaagctgtataattgtaatagctgtgggaagcaattttatcagaagagtgatttagacagacagttaagaacacacactggtgaaaaaccatttaagtgtaatgtttgcgaaaagcagtttagtaacaaaagctctttaaaaactcatttaagaactcacactggtgagaagccgtataaatgtaatgattgtggcaagcaatttaatcaaaagggtactttacaatcacatttaagaacacacactggtgagaaaccatttgaatgtaatgtttgtcgtcgtcgatttgctcacagcaatacattgacaaaacatctgagaactcacactggtgtgaagccgtataaatgttatgattgtggcaagcaatttaatcaaaagcgtactttagaatcacatttaagaacacacactggtgagaaaccatttgaatgtaatgtctgcgaaaagcagttcagtcacaaaagtaaattaaaagttcatttaagaactcacactggtgagaaaccatttgagtgtaaggtttgtcgacgtcgatttgctcacagcaatacattgacaaaacatctgagaactcacacttgtgagaagccgtataaatgtaatgattgtggcaagcaattttatcaaaagggtactttagaatcacatttaagaacacacactggtgagaaaccatttgaatgtaatgtttgcgaaaagcagttcagtcacaaaagtaaattaaaagttcatttaagaactcacactggtgagaaaccatttgagtgtaatgtttgcgaaaagcagtttcgtgacaaaagctattttaaaactcatttaagaacacacactggtgagaaaccatataaatgtaatagctgtgggaagcaattttatcagaagagtgatttagacagacatttaagaacacacactggtgaaaaaccatataaatgtaatagctgtgggaagcaattttatcggaagagtgatttagacagacatttaagaacacacactggtgaaaaaccatttaagtgtaatgtttgcgaaaagcagtttagtgacaaatgctatttaaaaactcatttaagaactcacactggtgagaaaccatataaatgtaatagctgtgggaagcaattttatcagaagagtgatttagacagacatttaagaacacacactggtgaaaaaccatttaagtgtaatgtttgtgaaaagcagtttagtgacaaaagctatttaaaaactcatttaagaactcacactggtgagaagccgtataaatgtaatgtttgtggcaagcaatttaataaaaagggtaatttagaatcacatttaagaacacacactggtgagaaaccatttgaatgtaaggtttgtcgacgtcgatttgctcacagcaatacattgacaaagcatctgagaactcacactggtgagaagccgtataaatgtaatgattgtggcaagcaatttaataaaaagggtactttacaatcacatttaagaacacatactggtgagaaaccatttgaatga
Protein Sequence
MHQSPAFCRICLAVDAPIFNIDDTALQLVYERLTGAFLVEGNRPVAACYICRAMLYKSHKLMVTATRADHALTAMLETAGEITEKSISLIDREAIGLCASLSFSVAECCDSTPPARVAVKTEPESQDAFDTATDNEGPAGVPAADVDETRDSDEDAGARGGGHYADGVPAADVDETRDSDEDAGARGGGHYADDGAAEGQQPVAGSSRHSYYGEPQSADTRHQCHVCLRGFQRKRHLQICLRTHTGEKLYNCNSCGKQFYQKSDLDRQLRTHTGEKPFKCNVCEKQFSNKSSLKTHLRTHTGEKPYKCNDCGKQFNQKGTLQSHLRTHTGEKPFECNVCRRRFAHSNTLTKHLRTHTGVKPYKCYDCGKQFNQKRTLESHLRTHTGEKPFECNVCEKQFSHKSKLKVHLRTHTGEKPFECKVCRRRFAHSNTLTKHLRTHTCEKPYKCNDCGKQFYQKGTLESHLRTHTGEKPFECNVCEKQFSHKSKLKVHLRTHTGEKPFECNVCEKQFRDKSYFKTHLRTHTGEKPYKCNSCGKQFYQKSDLDRHLRTHTGEKPYKCNSCGKQFYRKSDLDRHLRTHTGEKPFKCNVCEKQFSDKCYLKTHLRTHTGEKPYKCNSCGKQFYQKSDLDRHLRTHTGEKPFKCNVCEKQFSDKSYLKTHLRTHTGEKPYKCNVCGKQFNKKGNLESHLRTHTGEKPFECKVCRRRFAHSNTLTKHLRTHTGEKPYKCNDCGKQFNKKGTLQSHLRTHTGEKPFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00640658;
90% Identity
iTF_00640658;
80% Identity
iTF_00640610;